Table 1 Links to resources mentioned in the text (contact the authors if a resource is no longer available at the given address)
From: Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis
| Name | URI or email address | Role in sharing of data |
|---|---|---|
| APG tree | http://www.mobot.org/MOBOT/research/APweb/ | Authoritative phylogeny from Angiosperm Phylogeny Group |
| Dryad | http://www.datadryad.org | Public archive of data associated with peer-reviewed bioscience articles |
| ICBN | http://ibot.sav.sk/icbn/main.htm | International Code of Botanical Nomenclature |
| ICSP | http://www.the-icsp.org/ | International Committee on Systematics of Prokaryotes |
| ICZN | http://iczn.org/ | International Commission on Zoological Nomenclature |
| JDAP | http://datadryad.org/jdap | Joint Data Archiving Policy that directs authors to submit supporting data to an appropriate public archive |
| Mesquite | http://www.mesquiteproject.org, mesquitelist@mesquiteproject.org | Interactive software for comparative analysis; email list is a common venue for addressing interoperability issues |
| MIAPA | http://www.evoio.org/wiki/MIAPA, miapa-discuss@googlegroups.com | Open project to develop a Minimum Information About a Phylogenetic Analysis standard |
| MorphoBank | http://www.morphobank.org/ | Web tool for sharing and publishing comparative data linked to images and specimen vouchers |
| NAR database issue | http://www.oxfordjournals.org/nar/database/c | List of secondary resources with alignments and trees (under protein sequences: domain databases) |
| NESCent | http://www.nescent.org | National Evolutionary Synthesis Center that supports many interoperability projects |
| NeXML | http://www.nexml.org | Open project to develop an XML format for comparative data and trees |
| NIH policy | http://grants.nih.gov/grants/policy/data_sharing/ | Data sharing policy applicable to NIH-funded research |
| NSF policy | http://www.nsf.gov/bfa/dias/policy/dmp.jsp | Data sharing policy applicable to NSF-funded research |
| NWO policy | http://www.nwo.nl/files.nsf/pages/SPES_5VEDDR/$file/Regeling%20subsidieverlening%20NWO.pdf | Data sharing policy applicable to NWO-funded research, policy specified on p19, items 30 and onwards |
| Phylomatic | http://www.phylodiversity.net/phylomatic/ | Software that supports grafting and pruning to create plant phylogenies from APG mega-tree |
| TDWG | http://www.tdwg.org | Biodiversity information standards organization with an active “Phylogenetic standards” interest group |
| TimeTree | http://www.timetree.net | Secondary resource synthesizing data on divergence times |
| iPlant TNRS | http://tnrs.iplantcollaborative.org/ | Taxonomic Name Resolution Service for plant names |
| ToLWeb | http://www.tolweb.org | Secondary resource to assemble a curated tree of life |
| TreeBASE | http://www.treebase.org | Public archive for published trees and character data. |
| uBio | http://www.ubio.org | Taxonomic name resolution service for life |
