BMC Research Notes

Table 1 Characteristics of oligonucleotide frequency profiles of common class 1 and common class 2 prokaryotic genomes

From: Two common profiles exist for genomic oligonucleotide frequencies

Oligonucleotide	Common class 1				Common class 2
Oligonucleotide	Member	Range (%)	c _div	SD	Member	Range (%)	c _div	SD
Mononucleotide	300	16.56–49.72	0.006	0.020	264	50.32–74.91	0.004	0.015
Dinucleotide	218	16.56–46.08	0.058	0.048	183	54.60–74.91	0.070	0.052
Trinucleotide	184	16.56–42.83	0.075	0.045	160	58.02–74.91	0.086	0.051
Tetranucleotide	174	16.56–43.13	0.097	0.054	161	58.02–74.91	0.124	0.117
Pentanucleotide	203	16.56–43.87	0.102	0.062	139	57.23–74.91	0.087	0.051
Hexanucleotide	158	16.56–42.68	0.143	0.073	155	58.02–74.91	0.160	0.076

Member: number of members; Range: range of GC content; c_div: class diversity; SD: standard deviation.

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ISSN: 1756-0500

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