Table 5 BLASTX similarity searches of P. superbus unigenes predicted to encode late embryogenesis abundant (LEA) proteins against the NCBI nr and LEAP [http://forge.info.univ-angers.fr/~gh/Leadb/index.php] databases
Contig ID & [No of ESTs] | Best BLAST hit & [Organism] | Database&Accession Number | BLAST* Bit Score E value | Disordered AAs (%) | GRAVY Index # | ||
|---|---|---|---|---|---|---|---|
PSC00061 [10] | LEA protein [Caenorhabditis briggsae] | NCBI nr | CAP25449 | 82.8 | 4e-14 | 86% | -0.765 |
PSC00061 | LEA protein [Arabidopsis thaliana] | LEAPdb | AAL59922 | 74.3 | 8e-16 | Â | Â |
PSC00416 [6] | LEA protein K08H10.1e [Caenorhabditis elegans] | NCBI nr | CCA65580 | 60.8 | 1e-7 | 18% | -0.618 |
PSC00489 | LEA protein [Caenorhabditis elegans] | LEAPdb | AAB69446 | 80.5 | 9e-18 | Â | Â |
PSC00489 [2] | LEA3 protein [Glycine max] | NCBI nr | CAA80491.1 | 68.6 | 2e-10 | 10% | -0.810 |
PSC00416 | LEA protein [Caenorhabditis elegans] | LEAPdb | AAB69446 | 74.7 | 3e-16 | Â | Â |
PSC00514 [2] | LEA3 protein [Glycine max] | NCBI nr | CAA80491.1 | 64.7 | 5e-12 | 9% | -0.854 |
PSC00514 | LEA protein [Pisum sativum] | LEAPdb | CAF32327 | 94.0 | 9e-22 | Â | Â |
PSC00782 [2] | Hypothetical protein [Caenorhabditis briggsae] | NCBI nr | CAP25465 | 66.2 | 9e-12 | 100% | -1.367 |
PSC00782 | LEA-like protein [Arabidopsis thaliana] | LEAPdb | BAB10116 | 67.4 | 4e-22 | Â | Â |
PSC01414 [1] | LEA protein [C. briggsae] | NCBI nr | XP_002637990.1 | 84.7 | 5e-15 | 100% | -1.424 |
PSC01414 | LEA-like protein [A. thaliana] | LEAPdb | BAD43695 | 76.6 | 1e-16 | Â | Â |
PSC01455 [2] | Hypothetical protein NCU01912 [Neurospora crassa] | NCBI nr | XP_965543.1 | 62.0 | 7e-8 | 99% | -1.034 |
PSC01455 | LEA-like protein [A. thaliana] | LEAPdb | NP_193834 | 61.2 | 6e-12 | Â | Â |
PSC01720 [1] | Predicted protein Gls24 [Gemella haemolysans] | NCBI nr | ZP_04776234.1 | 78.2 | 8e-13 | 40% | -0.623 |
PSC01720 | LEA-like protein [A. thaliana] | LEAPdb | BAD43695 | 90.5 | 9e-21 | Â | Â |
PSC01853 [1] | Hypothetical protein [Haemophilus influenzae] | NCBI nr | ZP_01786547 | 67.0 | 1e-9 | 100% | -0.988 |
PSC01853 | Hypothetical protein [H. influenzae] | LEAPdb | ZP_01786547 | 67.0 | Â | 9e-14 | Â |
PSC03871 [2] | Hypothetical protein K08H10.1f [C. elegans] | NCBI nr | CCA65610 | 42.4 | 3e-7 | 77% | -0.656 |
PSC03871 | LEA group 3 protein [Lindernia brevidens] | LEAPdb | ACA49509 | 54.7 | 5e-10 | Â | Â |
PSC04142 [1] | Hypothetical protein [Toxoplasma gondii] | NCBI nr | EEE21041 | 55.8 | 2e-6 | 100% | -1.340 |
PSC04142 | LEA-like protein [A. thaliana] | LEAPdb | BAD43695 | 50.4 | 4e-09 | Â | Â |
PSC04118 [1] | Protein At5g44310 [A. thaliana] | NCBI nr | AAS49101§ | 47.0 | 1e-5 | 100% | -1.405 |
PSC04118 | LEA-like protein [A. thaliana] | LEAPdB | BAD43695 | 47.0 | 2e-9 | Â | Â |
PSC04695 [2] | Hypothetical protein K08H10.1f [C. elegans] | NCBI nr | CCA65610 | 73.6 | 1e-11 | 100% | -1.297 |
PSC04695 | LEA-like protein [A. thaliana] | LEAPdb | BAD43695 | 67.4 | 7e-14 | Â | Â |