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Table 1 Main average indices in different sequencing strategies for 100 genomes (400 bp read length, 8 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST GCE(%) SBE(%) IDR(%) FLT(%) FDT(%) CN NB SN
6 × SE + 10 × PE 98.26971 0.004915 0.000364 0.310807 0.4678237 50.94 331136.7 3.64
10 × SE + 10 × PE 98.30248 0.004265 0.000322 0.2626039 0.5629617 44.75 383793.6 3.51
15 × SE + 10 × PE 98.32861 0.003293 0.000294 0.2518801 0.6041274 43.12 397060.7 3.48
20 × SE + 10 × PE 98.35117 0.00227 0.000293 0.2307405 0.6301239 42.3 411169.2 3.66
  1. ST: Sequencing Strategy
  2. SE: Single end reads
  3. PE: paired end reads
  4. GOE: Genome Coverage Rate
  5. SBE: Single Base Error Rate
  6. IDR: Indel Error Rate
  7. FLT: False Gene Duplication Rate
  8. FDT: False Gene Loss Rate
  9. CN: Contig Number
  10. NB: Contig N50 Size(bp)
  11. SN: Scaffold number