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Table 1 Main average indices in different sequencing strategies for 100 genomes (400 bp read length, 8 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST

GCE(%)

SBE(%)

IDR(%)

FLT(%)

FDT(%)

CN

NB

SN

6 × SE + 10 × PE

98.26971

0.004915

0.000364

0.310807

0.4678237

50.94

331136.7

3.64

10 × SE + 10 × PE

98.30248

0.004265

0.000322

0.2626039

0.5629617

44.75

383793.6

3.51

15 × SE + 10 × PE

98.32861

0.003293

0.000294

0.2518801

0.6041274

43.12

397060.7

3.48

20 × SE + 10 × PE

98.35117

0.00227

0.000293

0.2307405

0.6301239

42.3

411169.2

3.66

  1. ST: Sequencing Strategy
  2. SE: Single end reads
  3. PE: paired end reads
  4. GOE: Genome Coverage Rate
  5. SBE: Single Base Error Rate
  6. IDR: Indel Error Rate
  7. FLT: False Gene Duplication Rate
  8. FDT: False Gene Loss Rate
  9. CN: Contig Number
  10. NB: Contig N50 Size(bp)
  11. SN: Scaffold number