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Table 2 Main average indices in different sequencing strategies for 100 genomes (100 bp read length, 8 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST GCE(%) SBE(%) IDR(%) FLT(%) FDT(%) CN NB SN
6 × SE + 10 × PE 98.06775 0.00498 0.000339 0.4892094 0.190552 72.11 209661.1 4
10 × SE + 10 × PE 98.09051 0.003982 0.000324 0.4596817 0.180621 63.08 240424.9 3.8367
15 × SE + 10 × PE 98.08065 0.004018 0.000322 0.4731213 0.1733068 61.77 241163.8 3.9184
20 × SE + 10 × PE 98.10211 0.004231 0.000339 0.4754001 0.1754001 59.65 244658.8 3.7642
  1. ST: Sequencing Strategy
  2. SE: Single end reads
  3. PE: paired end reads
  4. GOE: Genome Coverage Rate
  5. SBE: Single Base Error Rate
  6. IDR: Indel Error Rate
  7. FLT: False Gene Duplication Rate
  8. FDT: False Gene Loss Rate
  9. CN: Contig Number