Skip to main content

Table 2 Main average indices in different sequencing strategies for 100 genomes (100 bp read length, 8 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST

GCE(%)

SBE(%)

IDR(%)

FLT(%)

FDT(%)

CN

NB

SN

6 × SE + 10 × PE

98.06775

0.00498

0.000339

0.4892094

0.190552

72.11

209661.1

4

10 × SE + 10 × PE

98.09051

0.003982

0.000324

0.4596817

0.180621

63.08

240424.9

3.8367

15 × SE + 10 × PE

98.08065

0.004018

0.000322

0.4731213

0.1733068

61.77

241163.8

3.9184

20 × SE + 10 × PE

98.10211

0.004231

0.000339

0.4754001

0.1754001

59.65

244658.8

3.7642

  1. ST: Sequencing Strategy
  2. SE: Single end reads
  3. PE: paired end reads
  4. GOE: Genome Coverage Rate
  5. SBE: Single Base Error Rate
  6. IDR: Indel Error Rate
  7. FLT: False Gene Duplication Rate
  8. FDT: False Gene Loss Rate
  9. CN: Contig Number
Back to article page

BMC Research Notes

ISSN: 1756-0500

Contact us