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Table 3 Main average indices in different sequencing strategies for 100 genomes (200 bp read length, 8 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST

GCE(%)

SBE(%)

IDR(%)

FLT(%)

FDT(%)

CN

NB

SN

6 × SE + 10 × PE

98.17144

0.003195

0.000334

0.4401864

0.2416131

61.15

253000.7

3.625

10 × SE + 10 × PE

98.15661

0.004024

0.000317

0.4076573

0.2861061

54.33

290749.3

3.7188

15 × SE + 10 × PE

98.16915

0.004743

0.000305

0.3916122

0.261398

53.47

301038.3

3.64

20 × SE + 10 × PE

98.17177

0.004877

0.000309

0.409125

0.2509012

52.98

289864.6

3.6

  1. ST: Sequencing Strategy
  2. SE: Single end reads
  3. PE: paired end reads
  4. GOE: Genome Coverage Rate
  5. SBE: Single Base Error Rate
  6. IDR: Indel Error Rate
  7. FLT: False Gene Duplication Rate
  8. FDT: False Gene Loss Rate
  9. CN: Contig Number
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BMC Research Notes

ISSN: 1756-0500

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