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Table 5 Main average indices in different sequencing strategies for read data of a S. Typhimurium strain (400 bp read length, 3 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST

CN

NB

SN

6 × SE + 10 × PE

85

149382

17

10 × SE + 10 × PE

77

195805

17

15 × SE + 10 × PE

77

195806

19

20 × SE + 10 × PE

81

195811

17

all SE + PE

73

196924

15

  1. ST: Sequencing Strategy
  2. SE: single end 454 FLX Titanium reads
  3. PE: paired end 454 FLX Titanium reads
  4. CN: large contig number
  5. NB: N50 bp length of the assembly result
  6. SN: scaffold number