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Table 5 Main average indices in different sequencing strategies for read data of a S. Typhimurium strain (400 bp read length, 3 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST CN NB SN
6 × SE + 10 × PE 85 149382 17
10 × SE + 10 × PE 77 195805 17
15 × SE + 10 × PE 77 195806 19
20 × SE + 10 × PE 81 195811 17
all SE + PE 73 196924 15
  1. ST: Sequencing Strategy
  2. SE: single end 454 FLX Titanium reads
  3. PE: paired end 454 FLX Titanium reads
  4. CN: large contig number
  5. NB: N50 bp length of the assembly result
  6. SN: scaffold number