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Table 6 Main average indices in different sequencing strategies for 17 Salmonella genomes (400 bp read length, 8 kb paired end library)

From: A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation

ST

GCE

SBA

IDR

FLT

FDT

CN

NB

SN

6 × SE + 10 × PE

98.71211859

0.000565917

0.000188639

0

0.020605811

58

201619

5

10 × SE + 10 × PE

98.80971421

0.000251291

2.09E-05

0

0.020605811

51

224241

5

15 × SE + 10 × PE

98.70601499

0.000796358

2.10E-05

0

0.061817433

47

224247

6

20 × SE + 10 × PE

98.70003553

0.000859158

2.10E-05

0

0.103029054

46

219591

5

  1. ST: Sequencing Strategy
  2. SE: single end 454 FLX Titanium reads
  3. PE: paired end 454 FLX Titanium reads
  4. GCE: genome coverage rate of the assembly result
  5. SBA: single base accuracy rate of the assembly result
  6. IDR: indel rate of the assembly result
  7. FDT: false gene duplication rate of the assembly result
  8. CN: large contig number
  9. NB: N50 bp length of the assembly result
  10. SN: scaffold number
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BMC Research Notes

ISSN: 1756-0500

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