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Table 1 Genetic loci screened in this study

From: Genome skimming identifies polymorphism in tern populations and species

Name

Chromosome

Function

Source

ACL (16)

27

ATP citrate lyase

[44]

AK1 (4-5)

17

Adenylate kinase 1

[44]

ALAS1 (8)

12

5-aminolevulinate synthase

[45]

AXIN (7)

14

Axin

[44]

BFIB* (7)

4

Beta-fibrinogen

[46]

BZW1 (6)

7

Basic Leucine Zipper Gene 1

This study

Brahma (15)

Z

Brahma/SMARCA-2

[45]

CEPU* (1)

24

CEPU/Neurotrimin

[44]

COI

MT

Cytochrome Oxidase I

[47]

CRMIL (14)

1

V-raf murine sarcoma viral oncogene

[44]

ENOL* (8)

21

Alpha-enolase

[48]

G3PDH (11)

1

Glyceraldehyde-3-phosphodehydrogenase

[49]

GAPDH (4)

1

Glyceraldehyde-3-phosphodehydrogenase

[50]

Lamin (3)

28

Lamin-A

[48]

Control Region

MT

D-loop of mitochondrial control region

This study, [11, 51]

MPP (4)

4

Myelin proteolipid protein

[45]

MYO* (2)

1

Myoglobin

[52]

ODC (6-7)

10

Ornithine decarboxylase

[53]

P40 (5)

2

Laminin receptor precursor P40

[44]

R35*

9

G-protein coupled receptor R35, exon1

This study

RGS4 (3)

8

Regulator G-protein signaling 4

[44]

VIM (7)

2

Vimentin

[44]

16S

MT

16S rRNA (L2724-H3292)

[54]

3399

9

Pleckstrin homology domain-containing B2

[4]

3862

14

WD repeat protein 24

[4]

12884

1

Dihydrolipoamide dehydrogenase

[4]

13336*

10

Eukaryotic translation initiation factor 3-1α

[4]

16264

3

Postsynaptic protein CRIPT

[4]

17483

4

High mobility group protein B2

[4]

20352

2

Unknown

[4]

21277*

2

Unknown

[4]

21281

5

Vacuolar H+ ATPase E1

[4]

21571

1

Unknown

[4]

24813

1

Unknown

[4]

25149

4

Carboxypeptidase Z precursor

[4]

25442*

6

Ubiquitin-conjugating enzyme E2, J1

[4]

26187

1

ATPase, lysosomal accessory protein 2

[4]

27270

1

Phosphoglycerate dehydrogenase-like 1

[4]

27331*

1

Unknown

[4]

  1. Each locus is shown with intron number in parentheses, chromosome location, gene function and source. Loci in bold are used in this paper for phylogenetic and/or population genetic analyses. Loci with an asterisk did not amplify or sequence consistently across species or showed non-specific priming problems