BMC Research Notes

Table 2 Biclusters, probe sets and gene frequency

From: Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks

				NG	SSS	SM		MS		MM			CX				HX				R	%
Sp	Ch	NN	PN	P	BPG	BP	G	BG	P	B	P	G	B	P	G	O	B	P	G	O	P	R
Hs	m2	21	1	143	4471	1535	4170	1034	2447	134	294	295	869	2586	4273	65	22	1149	6119	21	4834	38
			7	287	5537	1105	2785	1319	3104	130	277	282	692	2188	3452	66	13	127	403	31	4743	38
	m3	18	1	503	5117	1010	2719	2132	5346	173	406	382	1127	3770	4324	65	11	6131	19473	25	12506	56
			7	1125	7366	594	1447	3612	9268	161	402	349	970	3420	3135	66	9	108	116	29	12146	55
Mm	m5	35	1	1278	4680	1306	3692	871	1912	112	235	253	721	1991	3354	66	8	1086	10485	26	3698	30
			7	1736	5680	944	2579	970	2144	75	157	167	551	1662	3077	67	6	165	1138	18	3204	26
	m8	15	1	962	8282	1242	3336	5167	14953	264	620	573	2797	11258	8965	63	49	7784	22325	27	31044	69
			7	2004	10043	784	1959	7050	20947	180	425	398	2345	9777	7126	65	37	1121	2937	25	30064	67
	m27	21	1	445	5485	1145	3097	2927	7256	257	586	569	1669	5609	6563	65	22	2164	12513	28	13639	60
			7	909	6651	708	1823	3794	9502	171	407	378	1227	4136	4517	67	13	377	1337	25	13202	58
Rn	m6	15	1	635	2806	709	2546	1049	2523	69	148	147	442	1361	3040	65	10	617	6851	18	4046	46
			7	914	3370	379	1291	1255	3033	60	128	143	283	882	1640	66	5	93	509	17	3888	44

NG: probe sets that do not target any known gene; SS, SM, MS, MM, CX and HX: probe set classes defined in the text; R: alternative probe sets; Sp: species; Ch: our chip model name (see Table 1); NN: number of networks; PN: probe number limit; P: probe set; B: bicluster; G: gene; O: mean density of points in biclusters (%); %R: percentage of alternative probe sets.

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ISSN: 1756-0500

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