From: Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks
All probe sets | Redundant probe sets | Similarity | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Chip | NetNb | PsNb | GeneNb | PairNb | %Gene | %Ps | Ps/Gene | 0% | 1% | 25% | 50% | 75% | 100% |
Human | m2 | 21 | 12626 | 9719 | 3984 | 21 | 38 | 2,38 | 48 | 12 | 9 | 6 | 10 | 15 |
m3 | 36 | 22283 | 14132 | 12385 | 34 | 56 | 2,60 | 50 | 15 | 8 | 7 | 10 | 12 | |
Mouse | m5 | 35 | 12488 | 9198 | 2642 | 18 | 30 | 2,23 | 54 | 15 | 7 | 6 | 9 | 9 |
m8 | 15 | 45101 | 23419 | 44052 | 44 | 69 | 3,03 | 68 | 8 | 6 | 3 | 5 | 9 | |
m27 | 21 | 22690 | 13996 | 13133 | 38 | 60 | 2,56 | 49 | 11 | 9 | 7 | 10 | 14 | |
Rat | m6 | 15 | 8799 | 5759 | 3596 | 29 | 46 | 2,45 | 43 | 9 | 7 | 5 | 10 | 25 |
Mean | 31 | 50 | 2,5 | 52 | 12 | 8 | 6 | 9 | 14 |