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Table 5 Reproducibility of similarity

From: Estimating the similarity of alternative Affymetrix probe sets using transcriptional networks

     

Sim 0%

Sim 100%

Common

Species

Comparison

NetNb1

NetNb2

#Tested

Reprod

#Tested

Reprod

Probe set pairs

Mouse

m27 vs m27

11 to 63

11 to 63

6311

98

1588

95

  

m8 vs m27

15

11

4705

89

1560

75

    

21

4705

89

1231

77

    

32

4702

90

1042

80

    

42

4708

91

946

81

    

63

4708

91

803

83

    

11to63

4706

89

1159

79

Genes

Human

m2 vs m3

21

36

409

89

88

69

 

Mouse

m5 vs m8

35

15

410

73

85

47

  

m5 vs m27

35

21

357

77

89

42

  

m8 vs m27

15

21

1547

87

493

75

  1. Common: category used to calculate reproducibility, Comparison: chips that are compared, NetNb1, NetNb2: number of networks used respectively in the first chip and in the second chip, #Tested: number of alternative probe sets pairs or genes tested, Reprod: reproducibility of similarity (%), Sim0%: 0% similarity class, Sim100%: 100% similarity class.