Locus | Name | Oligonecleotide sequence (5’-3) | Amplicon size (bp) | Specificity ( SCCmec type) |
---|---|---|---|---|
A | CIF2 F2 | TTCGAGTTGCTGATGAAGAAGG | 495 | I |
CIF2 R2 | ATTTACCACAAGGACTACCAGC | |||
B | KDP F1 | AATCATCTGCCATTGGTGATGC | 284 | II |
KDP R1 | CGAATGAAGTGAAAGAAAGTGG | |||
C | MECI P2 | ATCAAGACTTGCATTCAGGC | 209 | II, III |
MECI P3 | GCGGTTTCAATTCACTTGTC | |||
D | DCS F2 | CATCCTATGATAGCTTGGTC | 342 | I, II, IV |
DCS R1 | CTAAATCATAGCCATGACCG | |||
E | RIF4 F3 | GTGATTGTTCGAGATATGTGG | 243 | III |
RIF4 R9 | CGCTTTATCTGTATCTATCGC | |||
F | RIF5 F10 | TTCTTAAGTACACGCTGAATCG | 414 | III |
RIF5 R13 | GTCACAGTAATTCCATCAATGC | |||
G | IS431 P4 | CAGGTCTCTTCAGATCTACG | 381 | pUB11C |
Pub110 R1 | GAGCCATAAACACCAATAGCC | |||
H | IS431 P4 | CAGGTCTCTTCAGATCTACG | 303 | III |
pT181 R1 | GAAGAATGGGGAAAGCTTAC | |||
mecA | MECA P4 | TCCAGATTACAACTTCACCAGG | 162 | Positive control |
 | MECA P7 | CCACTTCATATGTTGTAGG |