Skip to main content

Table 1 Accession numbers and taxonomic sampling used in this study

From: Phylogeny and chronology of the major lineages of New World hystricognath rodents: insights on the biogeography of the Eocene/Oligocene arrival of mammals in South America

Terminal

Species

ADRA2B

IRBP

vWF

GHR

BRCA1

RAG1

Mitochondrial genome

Cox1

Cytb

Mus

Mus musculus

NM_009633

AF126968

U27810

BC075720

NM_009764

NM_009019

NC_005089

  

Rattus

Rattus norvegicus

M32061

AJ429134

AJ224673

NM_017094

NM_012514

NM_053468

NC_001665

  

Nannospalax

Nannospalax ehrenbergi

AM407905

JN414825

FM162064

AY294898

JN414208

JN414978

NC_005315

  

Jaculus

Jaculus jaculus

AM407906

AM407907

AJ297765

AF332040

JN414198

JN414964

NC_005314

  

Glis

Glis glis

AJ427258

AJ427235

AJ224668

AM407916

 

AB253971

NC_001892

  

Sciurus

Sciurus sp.1

AJ315942

AY227620

AM407918

AF332032

AF332044

AY241477

NC_002369

  

Castor

Castor Canadensis

AJ427260

AJ427239

AJ427228

AF332026

AF540622

JN414956

NC_015108

  

Anomalurus

Anomalurus sp.2

AJ427259

AJ427230

AJ427229

AM407919

JN414191

JN414951

NC_009056

  

Laonastes

Laonastes aenigmamus

AM407899

AM407903

AM407897

AM407901

JN414207

JN414977

  

AM407933

Thryonomys

Thryonomys swinderianus

AJ427267

AJ427243

AJ224674

AF332035

JN414206

JN414976

NC_002658

  

Petromus

Petromus typicus

AJ427268

AJ427244

AJ251144

JN414761

AF540639

JN414974

  

DQ139935

Bathyergus

Bathyergus suillus

AJ427252

AJ427251

AJ238384

FJ855201

    

AY425913

Heterocephalus

Heterocephalus glaber

AM407924

AM407925

AJ251134

AF332034

AF540630

JN414953

NC_015112

  

Hystricidae

Trichys sp./Hystrix sp.3

AJ427266

AJ427245

AJ224675

AF332033

AF540631

JN414970

 

JN714184

FJ472577

Chinchilla

Chinchilla lanigera

AJ427271

AJ427246

AJ238385

AF332036

JN414194

JN414958

JX312692

  

Dinomys

Dinomys branickii

AM050859

AM050862

AJ251145

AF332038

DQ354450

JN414963

  

AY254884

Cavia

Cavia porcellus

AJ271336

AJ427248

AJ224663

AF238492

 

NT_176327

NC_000884

  

Cuniculus

Cuniculus sp.4

AM050861

AM050864

AJ251136

AF433928

JN414190

JN414950

 

JF459149

AY206573

Trinomys

Trinomys sp.5

  

AJ849316

  

EU313337

JX312694

  

Proechimys

Proechimys sp.6

  

AJ251139

AF332039

 

EU313332

HM544128

  

Capromys

Capromys pilorides

AM407926

AM407927

AJ251142

AF433949

JN414192

JN414954

  

AF422915

Tympanoctomys

Tympanoctomys barrera

   

AF520655

  

HM544132

  

Spalacopus

Spalacopus cyanus

   

AF520653

  

HM544133

  

Octodon

Octodon sp.7

AM050860

AM050863

AJ238386

AM407928

  

HM544134

  

Ctenomys

Ctenomys sp.8

JN413825

JN414816

JN415078

JN414757

JN414196

JN414961

HM544130

  

Sphiggurus

Sphiggurus sp.9

  

AJ224664

FJ855212

  

JX312693

  

Erethizon

Erethizon dorsatum

AJ427270

AJ427249

AJ251135

AF332037

DQ354451

JN414966

 

JF456594

FJ357428

Oryctolagus

Oryctolagus cuniculus

Y15946

Z11812

U31618

AF015252

DQ354452

M77666

NC_001913

  

Lepus

Lepus sp.10

AJ427254

AJ427250

AJ224669

AF332016

AF284005

 

NC_004028

  

Ochotona

Ochotona princeps

AJ427253

AY057832

AJ224672

AF332015

AF540635

JQ073183

NC_005358

  

Homo

Homo sapiens

AF316895

J05253

M25851

X06562

NM_007294

NG_007528

NC_012920

  

Macaca

Macaca mulatta

AM050852

AJ313476

AJ410302

U84589

NM_001114949

NW_001100721

NC_005943

  
  1. Table Footnote: (1) Sciurus vulgaris (adra2b, IRBP), Sciurus aestuans (vWF), Sciurus niger (GHR, BRCA1), Sciurus ignitus (RAG1), Sciurus vulgaris (mitochondrion, complete genome); (2) Anomalurus sp. (A2AB, irbp, vWF, ghr), Anomalurus beecrofti (BRCA1, RAG1), Anomalurus sp. (mitochondrion, complete genome); (3) Trichys fasciculata (A2AB, irbp, VWF), Hystrix africaeaustralis (GHR, BRCA1), Hystrix brachyurus (RAG1), Hystrix indica (CO1) Hystrix cristata (cytb); (4) Cuniculus paca (adra2b, irbp, vWF, GHR), Cuniculus taczanowskii (BRCA1, RAG1), Cuniculus paca (CO1, cytb); (5) Trinomys paratus (vWF), Trinomys iheringi (RAG1), Trinomys dimidiatus (mitochondrion, complete genome); (6) Proechimys oris (vWF), Proechimys longicaudatus (GHR), Proechimys simonsi (RAG1), Proechimys longicaudatus (mitochondrion, complete genome); (7) Octodon lunatus (adra2b, irbp, vWF), Octodon degus (ghr, mitochondrion, complete genome); (8) Ctenomys boliviensis (adra2b, IRBP, vWF, GHR, BRCA1, RAG1), Ctenomys rionegrensis (mitochondrion, partial genome); (9) Sphiggurus melanurus (vWF), Sphiggurus mexicanus (GHR), Sphiggurus insidiosus (mitochondrion, complete genome); (10) Lepus crawshayi (A2AB, irbp, vWF), Lepus capensis (GHR, BRCA1), Lepus europaeus (mitochondrion, complete genome).
Back to article page

BMC Research Notes

ISSN: 1756-0500

Contact us