Table 4 Homopolymer exact match occurrences
From: Empirical assessment of sequencing errors for high throughput pyrosequencing data
Newbler | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
A | 10112299 | 3780060 | 1394445 | 591882 | 250066 | 94484 | 27007 | 4569 | 498 | 61 | 10 | 9 |
C | 9275676 | 1932907 | 270496 | 54226 | 8510 | 1239 | 175 | 6 | 0 | 0 | 0 | 0 |
G | 9325002 | 1918715 | 273077 | 51062 | 7796 | 1026 | 115 | 10 | 0 | 0 | 0 | 0 |
T | 10114600 | 3747686 | 1369516 | 584450 | 260939 | 101704 | 33958 | 6960 | 802 | 88 | 37 | 18 |
13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | |
A | 10 | 4 | 3 | 7 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 1 |
C | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
G | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
T | 21 | 11 | 4 | 2 | 4 | 1 | 0 | 2 | 0 | 0 | 0 | 0 |
Total match positions: 80,998,946 | ||||||||||||
Celera | ||||||||||||
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |
A | 8266460 | 3097760 | 1128372 | 492925 | 215277 | 82702 | 26304 | 4552 | 651 | 79 | 38 | 24 |
C | 7527051 | 1547142 | 217848 | 43078 | 6786 | 876 | 113 | 0 | 0 | 0 | 0 | 0 |
G | 7443144 | 1495949 | 212552 | 41896 | 6191 | 882 | 147 | 20 | 0 | 0 | 0 | 0 |
T | 8322275 | 3084911 | 1146793 | 502731 | 224735 | 89882 | 29349 | 5634 | 423 | 55 | 32 | 25 |
13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | |||
A | 15 | 12 | 16 | 5 | 1 | 1 | 3 | 0 | 0 | 1 | ||
C | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||
G | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | ||
T | 48 | 12 | 11 | 8 | 6 | 2 | 2 | 1 | 0 | 0 | ||
Total match positions: 66,248,219 | ||||||||||||