Table 1 Pearson-based combinations of known 6-mer restriction enzymes
From: A combinatorial approach to the restriction of a mouse genome
Palindrome | Name example | Average restriction frequency/10Â kb | 1st best choice | Pearson correlation | Similarity count | 2nd best choice | Pearson correlation | Similarity count |
|---|---|---|---|---|---|---|---|---|
AACGTT | AclI | 0.516 | CAATTG | -0.067 | 2 | GGATCC | -0.063 | 0 |
AAGCTT | HindIII | 3.374 | TCCGGA | -0.056 | 0 | GCCGGC | -0.054 | 1 |
AATATT | SspI | 6.991 | CAGCTG | -0.264 | 0 | CTGCAG | -0.257 | 0 |
ACATGT | PciI | 3.793 | AGATCT | -0.137 | 1 | GGATCC | -0.120 | 1 |
ACCGGT | AgeI | 0.216 | AATATT | -0.096 | 0 | TTATAA | -0.079 | 0 |
ACGCGT | MluI | 0.089 | AGTACT | -0.067 | 2 | GATATC | -0.059 | 0 |
ACTAGT | SpeI | 1.485 | AGATCT | -0.080 | 2 | ATCGAT | -0.075 | 0 |
AGATCT | BglII | 3.614 | TTTAAA | -0.188 | 0 | GCATGC | -0.145 | 1 |
AGCGCT | AfeI | 0.352 | AATATT | -0.169 | 0 | CATATG | -0.135 | 0 |
AGGCCT | StuI | 2.345 | AATATT | -0.244 | 0 | TTATAA | -0.232 | 0 |
AGTACT | ScaI | 2.686 | CAGCTG | -0.183 | 2 | CTGCAG | -0.141 | 2 |
ATCGAT | ClaI | 0.471 | TTTAAA | -0.178 | 0 | CAGCTG | -0.141 | 0 |
ATGCAT | AvaIII | 3.520 | AGATCT | -0.136 | 1 | GGTACC | -0.129 | 0 |
ATTAAT | AseI | 4.695 | CTGCAG | -0.202 | 0 | CAGCTG | -0.189 | 0 |
CAATTG | MfeI | 2.166 | CTGCAG | -0.154 | 2 | GCATGC | -0.126 | 3 |
CACGTG | AcvI | 0.847 | AATATT | -0.176 | 0 | CATATG | -0.138 | 2 |
CAGCTG | PvuII | 3.435 | AATATT | -0.264 | 0 | TTATAA | -0.191 | 0 |
CATATG | NdeI | 3.594 | AGGCCT | -0.151 | 0 | CTGCAG | -0.138 | 2 |
CCATGG | NcoI | 3.056 | ATTAAT | -0.152 | 1 | AATATT | -0.145 | 1 |
CCCGGG | XmaI | 0.566 | ATTAAT | -0.183 | 0 | TTATAA | -0.165 | 0 |
CCGCGG | KspI | 0.111 | AATATT | -0.115 | 0 | TTATAA | -0.107 | 0 |
CCTAGG | AvrII | 2.034 | TTTAAA | -0.208 | 1 | TTATAA | -0.160 | 1 |
CGATCG | PvuI | 0.036 | TCATGA | -0.060 | 3 | TTATAA | -0.059 | 1 |
CGGCCG | EagI | 0.127 | CATATG | -0.107 | 0 | AATATT | -0.105 | 0 |
CGTACG | PspLI | 0.049 | AATATT | -0.082 | 1 | TTTAAA | -0.074 | 1 |
CTCGAG | XhoI | 0.469 | CATATG | -0.118 | 0 | TTATAA | -0.116 | 0 |
CTGCAG | PstI | 3.221 | AATATT | -0.257 | 0 | TTATAA | -0.205 | 0 |
CTTAAG | AflII | 2.347 | ATCGAT | -0.094 | 0 | GGATCC | -0.090 | 0 |
GAATTC | EcoRI | 3.073 | CAGCTG | -0.132 | 0 | GCATGC | -0.111 | 1 |
GACGTC | ZraI | 0.237 | AATATT | -0.101 | 0 | TCATGA | -0.085 | 2 |
GAGCTC | SacI | 2.308 | AATATT | -0.171 | 0 | ATTAAT | -0.145 | 0 |
GATATC | EcoRV | 1.850 | CAGCTG | -0.162 | 0 | CTGCAG | -0.154 | 0 |
GCATGC | SphI | 2.001 | AGATCT | -0.145 | 1 | GATATC | -0.142 | 1 |
GCCGGC | NaeI | 0.289 | AATATT | -0.181 | 0 | ATTAAT | -0.148 | 0 |
GCGCGC | BsePI | 0.177 | TTATAA | -0.111 | 0 | AATATT | -0.108 | 0 |
GCTAGC | NheI | 1.157 | AATATT | -0.139 | 1 | ATTAAT | -0.109 | 1 |
GGATCC | BamHI | 1.989 | TTTAAA | -0.201 | 0 | ATTAAT | -0.140 | 1 |
GGCGCC | KasI | 0.251 | ATTAAT | -0.150 | 0 | AATATT | -0.149 | 0 |
GGGCCC | ApaI | 1.153 | AATATT | -0.188 | 0 | ATTAAT | -0.186 | 0 |
GGTACC | KpnI | 1.184 | TTTAAA | -0.188 | 1 | ATGCAT | -0.129 | 0 |
GTATAC | SnaI | 1.511 | AGATCT | -0.076 | 1 | GGTACC | -0.067 | 3 |
GTCGAC | SalI | 0.128 | AGTACT | -0.043 | 1 | TCATGA | -0.040 | 3 |
GTGCAC | VneI | 1.674 | AATATT | -0.179 | 0 | ATTAAT | -0.144 | 0 |
GTTAAC | HpaI | 1.253 | ATCGAT | -0.098 | 0 | AGATCT | -0.075 | 0 |
TACGTA | SnaBI | 0.333 | CCTAGG | -0.057 | 1 | ATCGAT | -0.051 | 1 |
TCATGA | BspHI | 3.576 | GGCGCC | -0.112 | 0 | GCTAGC | -0.102 | 0 |
TCCGGA | AccIII | 0.363 | AATATT | -0.146 | 0 | TTATAA | -0.142 | 0 |
TCGCGA | NruI | 0.043 | ATGCAT | -0.060 | 1 | CATATG | -0.053 | 0 |
TCTAGA | XbaI | 3.145 | GGCGCC | -0.069 | 0 | CCGCGG | -0.059 | 0 |
TGATCA | BclI | 2.721 | CTGCAG | -0.098 | 2 | AGCGCT | -0.090 | 0 |
TGCGCA | AviII | 0.377 | TTATAA | -0.109 | 0 | AATATT | -0.102 | 0 |
TGGCCA | MscI | 2.658 | AATATT | -0.200 | 0 | ATTAAT | -0.165 | 0 |
TGTACA | BsrGI | 3.332 | GGTACC | -0.077 | 3 | TCCGGA | -0.070 | 0 |
TTATAA | PsiI | 5.286 | AGGCCT | -0.232 | 0 | CTGCAG | -0.205 | 0 |
TTCGAA | AsuII | 0.407 | TTATAA | -0.055 | 2 | GTATAC | -0.033 | 0 |
TTTAAA | DraI | 10.198 | CCTAGG | -0.208 | 1 | GGATCC | -0.201 | 0 |