New players in the same old game: a system level in silico study to predict type III secretion system and effector proteins in bacterial genomes reveals common themes in T3SS mediated pathogenesis

Table 1 Number of T3SS positive bacteria at different ‘e’ values ^a

‘e’ value	All	F relaxed	Q relaxed	F & Q relaxed
0.1	29	100	30	136
0.01	22	79	22	126
0.001	18	63	19	115
0.0001	18	25	19	82
0.00001	16	22	17	36

(a) Absolute numbers are shown in a tabular form. ‘All’: all 10 proteins were used to predict the presence of T3SS system. ‘F relaxed’: all but YscF proteins were used, ‘Q relaxed’: all but YscQ were used and ‘F & Q relaxed’: both YscF and YscQ were omitted from the prediction. Different ‘e’ values are shown in different colours.

ISSN: 1756-0500