New players in the same old game: a system level in silico study to predict type III secretion system and effector proteins in bacterial genomes reveals common themes in T3SS mediated pathogenesis

Table 2 Newly identified candidates

Name	Famliy	Host organism
Hahella chejuensis	?	?
Hyphomicrobium sp. MC1	Ysc	?
Variovorax paradoxus	Hrc2/Inv-Mxi-Spa	Human
Chelativorans BNC1, Geobacter bemidjiensis	Rhizobiales	Plant, ?
Dickeya dadantii, Marinomonas mediterranea, Herbaspirillum seropedicae, Ramlibacter tataouinensis, Cupriavidus taiwanensis	Hrc1	Plant, ?, ?, ? , plant
Acidovorax avenae, Sinorhizobium fredii,	Hrc2	Plant, plant
Parachlamydia acanthamoebae, Waddlia chondrophila, Simkania negevensis	Chlamydiales	Amoeba, human, Human
Shewanella baltica	Ssa-Esc	Fish
Proteus mirabilis	Inv-Mxi-Spa	Human
Selenomonas sputigena,	?	Human

The table enlists the newly identified bacteria with T3SS machinery. The respective T3SS family and host for each of the candidate is shown in separate columns. ‘?’ implies unknown family or host.

ISSN: 1756-0500