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Table 2 Summary statistics for the loci developed in this study

From: Twenty-one new sequence markers for population genetics, species delimitation and phylogenetics in wall lizards (Podarcis spp.)

Locus

Species sequenced

Success rate (%)

N

Sites (bp)

NetSites

S

H

Hd

π

Rm

Indels (size)

GenBank accession numbers

Pod6b

PB, PL, PV, PM

76

74

481-491

404

55

33

0.945

0.012

4

6 (7/1/1/5/8/2)

KC680863 – KC680907

Pod7b

PB, PL, PV, PM, PT

88

86

379-418

312

42

26

0.918

0.018

2

5 (1/7/20/19/6)

KC680908 – KC680951

Pod11

PB, PL, PV, PM, PT

86

84

432-437

344

43

34

0.944

0.016

7

5 (1/M/5/1/1)

KC680952 – KC681005

Pod12b

PB, PL, PV, PT

69

68

404-656

288

65

32

0.933

0.025

4

9 (6/7/1/1/1/245/3/3/1)

KC681006 – KC681046

Pod13

PB, PL, PV, PM

71

70

367-381

261

33

20

0.713

0.011

3

4 (14/4/1/1)

KC681047 – KC681087

Pod14

PB, PL, PV, PM

82

80

459-486

363

33

27

0.918

0.016

4

6 (10/22/21/1/3/9)

KC681088 – KC681136

Pod14b

PB, PL, PV, PM, PT

84

82

486-508

348

54

31

0.893

0.016

5

7 (3/M/4/M/28/1/4)

KC681137 – KC681183

Pod15

PB, PL, PV, PM, PT

82

80

498-540

370

51

35

0.955

0.021

5

5 (11/2/2/2/1)

KC681184 – KC681227

Pod15b

PB, PL, PV, PM, PT

86

84

420-433

399

41

35

0.939

0.009

5

5 (M/13/2/2/M)

KC681228 – KC681284

Pod16

PB, PL, PV, PM, PT

76

74

313-364

213

46

38

0.972

0.035

6

11 (18/M/1/5/18/11/7/13/2/11/33)

KC681285 -- KC681332

Pod17

PB, PL, PV, PM, PT

88

86

380-405

246

32

29

0.927

0.014

2

7 (14/1/1/25/M/1/1)

KC681333 - KC681399

Pod20

PB, PL, PV, PM, PT

82

80

396-410

305

34

27

0.913

0.012

1

4 (1/1/M/13)

KC681400 - KC681448

Pod21

PB, PL, PV, PM, PT

86

84

303-316

212

39

24

0.916

0.017

2

4 (9/7/1/13)

KC681449 - KC681492

Pod25

PB, PL, PV, PM, PT

53

52

266-294

233

29

21

0.937

0.020

2

4 (1/18/8/2)

KC681493 - KC681522

Pod31

PB, PL, PV, PM, PT

69

68

491-909

383

37

28

0.904

0.010

4

13 (1/5/17/1/9/382/10/2/5/10/2/12/2)

KC681523 - KC681565

Pod33

PB, PL, PV, PM, PT

86

84

325-340

242

29

30

0.840

0.010

3

4 (1/16/3/M)

KC681566 - KC681614

Pod38

PB, PL, PV, PM

80

78

536-539

406

39

15

0.860

0.024

3

5 (1/2/1/2/1)

KC681615 - KC681656

Pod43

PB, PL, PV, PM, PT

73

72

394

366

16

17

0.720

0.004

0

0

KC681657 - KC681692

Pod55

PB, PL, PV, PM, PT

90

88

423

354

33

26

0.737

0.009

5

0

KC681693 - KC681736

Pod69

PB, PL, PV, PM, PT

90

88

388

339

15

15

0.812

0.004

0

0

KC681737 - KC681780

Pod72

PB, PL, PV, PM, PT

61

60

469-485

358

52

20

0.884

0.023

8

6 (1/5/11/1/7/14)

KC681781 - KC681810

  1. Species sequenced: PB Podarcis bocagei, PL P. liolepis, PV P. vaucheri, PM P. muralis, PT P. tiliguerta. N number of sequenced gene copies, Sites size range of sequences in the alignment, NetSites number of sites effectively used for polymorphism calculations (removing indels and Ns), S number of segregating sites; π nucleotide diversity, H number of haplotypes, Hd haplotype diversity, Rm minimum number of recombination events [15], Indels number of insertion/deletion polymorphisms. The size of indels (with respect to each alignment) is reported in parentheses. M means microsatellite-type indel. For the same information detailed by species, please see Additional file 2.
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BMC Research Notes

ISSN: 1756-0500

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