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Table 1 Summary of reads received from phasmid samples

From: Analysis of the gut microbiota of walking sticks (Phasmatodea)

 

P. schultei anterior midgut

R. artemis anterior midgut

R. artemis posterior midgut

Total

# of positive samples

4

4

3

 

All sequences:

# reads passed quality control

9,255

9,697

7,054

26,006

Average # reads per sample

2,313.75

2,424.25

2,351.33

 

# 100% id OTUs

   

8,090

# 99% id OTUs

   

2,702

# 97% id OTUs

   

844

After RDP CLASSIFIER:

# chloroplast 16S

   

14,541

# mitochondrial 16S and other contaminants

   

5,786

# bacterial 16S reads

112

171

5,396

5,679

Average # reads per sample

28

43

1,799

 

# reads (# OTUs) by phylum

 Actinobacteria

3(2)

13(9)

13(4)

29(13)

 Armatimonadetes

0

1(1)

0

1(1)

 Bacteroidetes

1(1)

5(3)

0

6(4)

 Firmicutes

3(3)

16(9)

5(4)

24(15)

 Lentisphaerae

3(1)

0

0

3(1)

 Proteobacteria

87(37)

65(39)

45(26)

197(75)

 Tenericutes

15(6)

65(10)

5,332(47)

5,412(47)

 TM7

0

6(5)

1(1)

7(6)

  1. Phyla Based on RDP CLASSIFIER results.