Types | Repeat units | Overall SSRs | Unique SSRs | Unique SSRs with polymorphisms | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Count | Length (bp) | GC (%) | Rate (%) | Count | Length (bp) | GC (%) | Rate (%) | Count | Length (bp) | GC (%) | Rate (%) | ||
Perfect SSRs | MNRs | 72258 | 11.70 | 53.21 | 40.21 | 35998 | 11.79 | 39.78 | 43.53 | 20632 | 11.20 | 30.33 | 58.87 |
 | DNRs | 53842 | 18.24 | 25.01 | 29.97 | 25510 | 20.38 | 22.49 | 30.85 | 9929 | 18.54 | 29.14 | 28.33 |
 | TNRs | 36726 | 17.52 | 49.12 | 20.44 | 12702 | 17.83 | 53.36 | 15.36 | 2557 | 19.04 | 47.18 | 7.30 |
 | TTRs | 2616 | 23.08 | 30.76 | 1.46 | 1784 | 23.45 | 34.81 | 2.16 | 685 | 24.05 | 31.43 | 1.95 |
 | PNRs | 800 | 28.37 | 41.10 | 0.45 | 482 | 28.05 | 41.36 | 0.58 | 225 | 27.31 | 43.09 | 0.64 |
 | HNRs | 449 | 32.54 | 51.24 | 0.25 | 199 | 32.38 | 57.14 | 0.24 | 101 | 31.96 | 56.41 | 0.29 |
 | Totali | 166691 | 15.41 | 42.78 | 92.77 | 76675 | 16.08 | 34.92 | 92.72 | 34129 | 14.35 | 31.43 | 97.38 |
Imperfect SSRs | -- | 10841 | 91.66 | 47.45 | 6.03 | 4615 | 79.28 | 43.76 | 5.58 | 429 | 40.85 | 34.12 | 1.22 |
Compound SSRs | -- | 2149 | 43.48 | 33.44 | 1.20 | 1404 | 44.53 | 31.38 | 1.70 | 488 | 34.70 | 34.34 | 1.39 |
Total | -- | 179681 | 20.34 | 42.39 | 100.00 | 82694 | 20.09 | 36.74 | 100.00 | 35046 | 13.96 | 34.38 | 100.0 |