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Table 3 The proportion of SSRs motifs in maize genome

From: A genome-wide analysis of simple sequence repeats in maize and the development of polymorphism markers from next-generation sequence data

Motif Total SSRs Unique SSRs Unique SSRs with polymorphisms
Count Length (bp) Rate (%) Count Length (bp) Rate (%) Count Length (bp) Rate (%)
A/T 32462 10.96 19.94 22640 10.92 29.18 14221 10.87 42.94
C/G 39796 12.31 24.44 14597 13.14 18.81 6411 11.93 19.36
AT/TA 20534 23.19 12.61 12169 13.26 15.68 3719 19.43 11.23
CG/GC 2085 12.56 1.28 1115 12.77 1.44 157 13.17 0.47
AC/GT/CA/TG 5153 14.05 3.16 3129 14.45 4.03 1318 15.61 3.98
AG/CT/TC/GA 26070 15.63 16.01 10706 17.30 13.80 4735 18.83 14.30
AAC/GTT/TGT/ACA/CAA/TTG 1389 17.93 0.85 1000 18.55 1.29 231 20.40 0.70
AAG/CTT/TTC/GAA/TCT/AGA 4032 16.19 2.48 1263 16.90 1.63 316 18.13 0.95
AAT/ATT/TAA/TTA/TAT/ATA 3378 23.13 2.07 1244 26.59 1.60 297 23.68 0.90
ACC/GGT/CAC/GTG/CCA/TGG 3322 15.85 2.04 1193 16.18 1.54 165 17.58 0.50
ACG/CGT/GAC/GTC/CGA/TCG 4244 17.23 2.61 1255 16.52 1.62 235 17.77 0.71
ACT/AGT/GTA/TAC/TAG/CTA 1372 20.30 0.84 363 17.88 0.47 90 17.83 0.27
AGC/GCT/CTG/CAG/TGC/GCA 8375 16.15 5.14 1773 16.33 2.28 364 17.27 1.10
AGG/CCT/GGA/TCC/CTC/GAG 1981 16.98 1.22 1224 17.47 1.58 327 18.91 0.99
ATC/GAT/CAT/ATG/TCA/TGA 4051 18.15 2.49 777 18.25 1.00 198 20.92 0.60
CCG/CGG/GGC/GCC/GCG/CGC 4582 16.38 2.81 3146 16.66 4.05 334 17.72 1.01
Total 162826 15.15 100 77594 13.94 100 33118 14.01 100