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Table 1 Number of jobs, average run time (in minutes), and maximum memory used (in GB) for the major steps of preprocessing

From: ASAP: an environment for automated preprocessing of sequencing data

  5 exomes 2 whole genomes
  # jobs Average time Maximum memory # jobs Average time Maximum memory
Alignment 38 43.6 4.3 82 277.5 4.5
Realignment 18 29.0 3.5 36 181.7 4.8
Recalibration 80 7.0 3.3 32 109.3 2.9
SNP calling 136 1.6 3.2 136 9.8 3.1
Annotation 24 28.6 2.7 24 29.7 2.7
Total 311    316