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Table 2 Basic information on the nuclear barcode regions with the number and the frequency of SNPs occurrence within Vitis vinifera and between Vitis spp. along with the haplotype number (Hn) and accessions numerosity (Nh) for each barcode region

From: The coding region of the UFGT gene is a source of diagnostic SNP markers that allow single-locus DNA genotyping for the assessment of cultivar identity and ancestry in grapevine (Vitis vinifera L.)

 

No. SNPs

Frequency (1SNP/bp)

Hn

Nh

 

Vitis spp.

V. vinifera

Vitis spp.

V. vinifera

Vitis spp.

V. vinifera

V. vinifera

GAI

17

14

44.76

54.36

23

18

1-101

ID04

21

21

19.95

19.95

33

28

1-44

IIC08

19

17

22.00

24.54

14

11

2-86

ATP

21

15

38.09

53.33

25

19

1-73

UFGT

29*

29*

31.69

31.69

97

92

1-15

Combined

107

96

31.00

34.55

134

126

1-4

  1. *only a selection of SNPs.