Table 2 Genes associated with the PVL prophage in isolate 07-17048

tx_lukF-PV

Rho-independent terminator of lukF-PV

89974…90030

56

MW2-USA400, BA000033.2 [1529274:1529329:r]RC

lukF-PV

Panton-Valentine leukocidin F

90081…91059

978

MW2-USA400, BA000033.2 [1529381:1530358:r]RC

lukS-PV

Panton-Valentine leukocidin S

91060…91999

939

CIGC128, AHVY01000005.1 [221466:222404:r]RC

O80065

Putative protein directly upstream of lukS-PV - leader-peptide of lukPV

92106…92239

133

CIGC128, AHVY01000005.1 [222512:222644:r]RC

tx_amidase1-phiSLT

Rho-independent terminator of bacteriophage amidase

92327…92383

56

TCH1516, CP000730.1 [1562363:1562418:r]RC

amidase1-phi12

Bacteriophage amidase

92388…93843

1455

MW2-USA400, BA000033.2 [1531688:1533142:r]RC

holin1-phiL54a

Bacteriophage holin

93853…94156

303

MSSA476, BX571857.1 [1023464:1023766]RC

sprFG

Small pathogenicity island RNA F and G

94155…94266

211

ED98, CP001781.1 [892742:892952:r]

rli28

Listeria sRNA rli28 homolog, locus 2

94395…94574

179

MW2-USA400, BA000033.2 [2051199:2051377:r]RC

txpA-phage

Toxin involved in plasmid maintenance

94400…94535

1662

MW2-USA400 BA000033.2[2051171:2051305:r]RC

sea

Enterotoxin A

94652…95426

774

ST772 strain 118, AJGE01000058.1 [57550:58323]RC

minor-phiNM3

Bacteriophage minor structural protein

96751…100537

3786

TCH70-ST1, ACHH02000016.1 [79909:83694]RC

Q8SDK3-phiNM3

Putative bacteriophagal protein

100552…102037

1485

ST772 strain 118, AJGE01000058.1 [50939:52423]RC

measure1-phiNM3

Bacteriophage tail length tape measure protein

102033…106578

4545

04-02981, CP001844.2 [2051791:2056320:r]RC

tailL-CC5

Bacteriophage major tail protein

107488…108133

645

N315, BA000018.3 [2024201:2024845:r]RC

A0EWZ3

Bacteriophage major capsid protein

109862…111008

1146

Mu50-VRSA, BA000017.4 [2103511:2104656:r]RC

Q6GF91

Putative protease

111031…111769

738

A9299, ACKH01000012.1 [7311:8048]RC

portal1-phiNM3

Bacteriophage portal protein type 1

111752…112940

1188

Mu50-VRSA, BA000017.4 [2105401:2106588:r]RC

terminase-phiNM3

Bacteriophagal terminase

112955…114617

1662

Mu50-VRSA, BA000017.4 [2106604:2108265:r]RC

rinB-phiPVL

Bacteriophage transcript activator B

116263…116413

150

TCH1516, CP000730.1 [2111630:2111779:r]RC

dut-phi

Phage dUTP pyrophosphatase

117277…117820

543

MRSA252, BX571856.1 [2152883:2153425:r]RC

sri

Staphylococcal replication inhibitor

120465…120624

159

AP009351.1 [1110173:1110331]RC

istB

Replicative DNA helicase

120617…121397

780

phage, FJ713816.1 [12631:13404]RC and 04–02981, CP001844.2 [886487:887266]RC

Q4ZAK4

Putative bacteriophagal protein

121406…122177

771

04-02981, CP001844.2 [885707:886477]RC

ssb3-phage

Putative DNA binding protein

123346…123898

552

NCTC8325, CP000253.1 [2065949:2066500:r]RC

DUF2483-phi80a

Putative bacteriophagal protein

124707…124929

222

H19, ACSS01000056.1 [6024:6245:r]RC

ant-phiPV83

Bacteriophage antirepressor

127131…127929

798

phage, AY508486.1 [26092:26889]RC

repressor-var3

Bacteriophage repressor

128338…129067

729

phage, AP001553.1 [2342:3070:r]

int1-phiPVL01

Bacteriophage integrase

131132…132338

1206

ST772 strain 118, AJGE01000058.1 [20637:21842:r]