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Table 13 Alignment statistics of HeliScope reads mapped against the Teposcolula Yucundaa soil Illumina-sequenced sample

From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing

Sample Description Reads Mapped (% Mapped) Molecular Length (bp) Total Mapped (bp)
Grand Plaza Bulk 1 2,145,104 (6.88%) 28.6 ± 5.8 61,255,930
Grand Plaza Bulk 2 2,072,270 (6.73%) 28.6 ± 5.8 59,267,370
Grand Plaza Phos. 1 1,641,432 (6.25%) 28.1 ± 5.5 46,147,661
Grand Plaza Phos. 2 1,275,863 (5.53%) 28.5 ± 5.7 36,333,528
Churchyard Bulk 1 2,423,489 (8.37%) 29.4 ± 6.1 71,205,930
Churchyard Bulk 2 2,292,885 (8.48%) 29.4 ± 6.1 67,327,090
Churchyard Phos. 1 2,033,593 (7.15%) 28.7 ± 5.9 58,421,595
Churchyard Phos. 2 2,563,785 (8.64%) 28.9 ± 5.9 74,145,815
Grand Plaza Sheared 46 (1.13%) 24.5 ± 0.7 1,126
Churchyard Sheared 90 (1.70%) 24.6 ± 1.0 2,212
Soil Bulk 80,900 (9.62%) 29.0 ± 5.7 2,349,874
Soil Sheared 6,729 (5.46%) 27.1 ± 4.4 182,463
  1. “Bulk” samples are the unsheared bulks. “Phos.” samples are the phosphatase-treated unsheared bulks. “Sheared” samples are the sheared bulks. “% Mapped” indicates the percentage of the total number of reads comprised by the reads mapped onto influenza genomes. “Molecular Length” is the mean length (± standard deviation) of the mapped reads.