From: False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing
Platform | Sample Description | No. Filtered Sequences | Molecular Length (bp) | Total Sequenced (bp) |
---|---|---|---|---|
HeliScope | Grand Plaza Bulk 1 | 31,183,210 | 34.1 ± 7.1 | 1,063,972,634 |
Grand Plaza Bulk 2 | 30,773,387 | 34.4 ± 7.2 | 1,058,435,915 | |
Grand Plaza Phos. 1 | 26,269,497 | 34.4 ± 7.3 | 904,192,902 | |
Grand Plaza Phos. 2 | 23,061,503 | 35.0 ± 7.4 | 806,304,129 | |
Churchyard Bulk 1 | 28,960,308 | 33.9 ± 7.0 | 981,718,381 | |
Churchyard Bulk 2 | 27,035,110 | 33.8 ± 7.0 | 914,002,286 | |
Churchyard Phos. 1 | 28,423,683 | 34.5 ± 7.3 | 981,600,068 | |
Churchyard Phos. 2 | 29,660,255 | 33.8 ± 7.0 | 1,003,204,069 | |
Grand Plaza Sheared | 4,088 | 27.1 ± 3.4 | 110,619 | |
Churchyard Sheared | 5,309 | 27.2 ± 3.5 | 144,140 | |
Soil Bulk | 840,915 | 33.4 ± 7.2 | 28,082,034 | |
Soil Sheared | 123,211 | 31.4 ± 6.4 | 3,869,834 | |
HiSeq 2500 | TP04 | 9,643,548 | 219.5 ± 43.9 | 2,117,000,413 |
TP09 | 6,640,789 | 236.2 ± 39.2 | 1,568,449,339 | |
TP10 | 5,368,267 | 223.7 ± 40.3 | 1,201,119,486 | |
TP18 | 7,693,734 | 215.5 ± 39.1 | 1,658,247,428 | |
TP37 | 9,113,392 | 207.2 ± 39.0 | 1,888,081,563 | |
TP48 | 3,720,696 | 227.8 ± 40.5 | 847,609,750 | |
Soil Bulk | 4,807,489 | 222.3 ± 40.6 | 1,068,497,871 |