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Table 2 Pre-assembly and automatic functional prediction test

From: STINGRAY: system for integrated genomic resources and analysis

Organism Genome size SRA1 Sequencing technology Total reads N° of contigs Time of pre-assembly6 Number of sequences with one GO-based annotations at least
        MF2 BP3 CC4 WA5
E. coli K12 4,7 Mb SRR001354 SOLiD 25162805 11011 30 min 1593 1577 1562 9328
N. meningitidis 2 Mb ERR015596 Illumina 5418859 4815 3 h 4 min 1055 1055 995 2812
S. pneumoniae GA17457 2 Mb SRR068304 454 GS FLX 252646 11317 2 h 52 min 5899 5942 5393 5340
P. papatasi ~170 Mb SRR066482 454 Titanium 498629 9836 5 h 18 min 554 553 458 9993
  1. 1 - SRA: Sequence Read Archive.
  2. 2 - MF: Molecular Function.
  3. 3 - BF: Biological Process.
  4. 4 - CC: Cellular component.
  5. 5 - WA: Without annotation.
  6. 6 - Pre-assemblies were performed on Intel 8 Core Server (1860mHz) and 16Gb RAM.