Skip to main content

Table 1 Summary of SNPs used for the catfish 250K SNP array design

From: Development of the catfish 250K SNP array for genome-wide association studies

SNP sources SNPs selected for array SNPs passed Affymetrix evaluation SNPs included on the array
Gene-associated SNPs    
 Channel catfish 93,699 72,202 32,188 (12.9%)
 Blue catfish 59,464 48,900 31,392 (12.6%)
 Inter-specific 83,549 72,260 39,605 (15.8%)
Anonymous SNPs    
 Channel catfish 404,777 302,309 146,928 (58.7%)
Total SNPs 641,489 495,671 250,113 (100%)