Table 3 Performance assessment of the catfish 250K SNP array
From: Development of the catfish 250K SNP array for genome-wide association studies
Samples* | Samples processed | Samples passed | SNPs converted** | Polymorphic SNPs | Avg. SNP call rate*** |
|---|---|---|---|---|---|
Wild catfish | 192 | 182 (94.8%) | 204,437 (81.7%) | 137,459 (55.0%) | 99.4% |
BC1 | 192 | 179 (93.2%) | 198,583 (79.4%) | 130,685 (52.3%) | 99.7% |
BC3 | 192 | 192 (100%) | 218,440 (87.3%) | 156,357 (62.5%) | 99.8% |