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Table 3 Performance assessment of the catfish 250K SNP array

From: Development of the catfish 250K SNP array for genome-wide association studies

Samples* Samples processed Samples passed SNPs converted** Polymorphic SNPs Avg. SNP call rate***
Wild catfish 192 182 (94.8%) 204,437 (81.7%) 137,459 (55.0%) 99.4%
BC1 192 179 (93.2%) 198,583 (79.4%) 130,685 (52.3%) 99.7%
BC3 192 192 (100%) 218,440 (87.3%) 156,357 (62.5%) 99.8%
  1. *BC1 denotes the catfish from 1st generation of backcross, and BC3 denotes the catfish from 3rd generation of backcross. **SNPs on the array that work. ***The average percentage of samples whose genotypes were successfully measured for given converted SNPs.