Table 3 Go term significantly represented in down-regulated and root-specific gene clusters

Down-regulated genes: 3845 (shoot vs. root)

Regulation of transcription

110

2.86%

6.28E-13

Regulation of transcription, NA-dependent

71

1.85%

1.20E-10

Regulation of RNA metabolic process

71

1.85%

1.48E-10

Transcription

65

1.69%

8.87E-10

Response to oxidative stress

27

0.70%

1.93E-08

Oxidation reduction

81

2.11%

1.21E-05

Cell wall polysaccharide metabolic process

5

0.13%

0.008210995

Oxylipin metabolic process

5

0.13%

0.008210995

Xylan metabolic process

5

0.13%

0.008210995

Xylan catabolic process

5

0.13%

0.008210995

Oxylipin biosynthetic process

5

0.13%

0.008210995

Shoot-specific genes: 438

Response to oxidative stress

11

2.51%

4.30E-05

Oxidation reduction

27

6.16%

1.30E-03

Cell wall polysaccharide metabolic process

4

0.91%

1.50E-03

Xylan metabolic process

4

0.91%

1.50E-03

Hemicellulose metabolic process

4

0.91%

1.50E-03

Xylan catabolic process

4

0.91%

1.50E-03

Regulation of transcription

27

6.16%

5.30E-03

Polysaccharide metabolic process

8

1.83%

6.90E-03