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Table 1 Repeat content of the yellowtail BESs

From: Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata

  Number of elements Length occupied (bp) % of sequence
Retroelements 284 60380 1.96
  SINEs: 57 6098 0.20
  Penelope 6 1229 0.04
  LINEs: 124 28193 0.92
   L2/CR1/Rex 81 16689 0.54
   R1/LOA/Jockey 2 112 0.00
   R2/R4/NeSL 7 1703 0.06
   RTE/Bov-B 24 6124 0.20
   L1/01 N4 6 2453 0.08
  LTR elements: 103 26089 0.85
   BEL/Pao 19 9346 0.30
   Ty1/Copia 1 629 0.02
   Gypsy/DIRS1 65 14242 0.46
   Retroviral 4 881 0.03
DNA transposons 281 40242 1.31
  hobo-Activator 73 5609 0.18
  Tc1-IS630-Pogo 96 20720 0.67
  PiggyBac 13 1887 0.06
  Tourist/Harbinger 11 1349 0.04
Unclassified: 15 1165 0.04
Total interspersed repeats:   101787 3.31
Small RNA: 69 21563 0.70
Satellites: 12 1797 0.06
Simple repeats: 1842 76925 2.50
Low complexity: 237 11293 0.37