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Table 1 Summary of RNAz scans of predicted structured regions in influenza B and C

From: Identification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C

  Segment Protein codeda Region z-scoreb SCIb p-classb
Influenza B 8 NS1, NEP 30–220 −1.44 (−2.49) 0.78 (0.86) 0.30 (0.94)
    450–620 −2.27 (−3.29) 0.83 (0.91) 0.81 (0.99)
    720–840 −0.98 0.94 0.37
  7 M1, BM2 0–170 −2.12 (−2.63) 0.66 (0.78) 0.28 (0.56)
  5 NP 1040–1160 −2.29 0.86 0.93
  4 HA 0–160 −2.22 (−3.21) 0.78 (0.87) 0.76 (0.96)
    780–950 −0.81 (−1.4) 0.80 (0.89) 0.20 (0.67)
  3 PA 630–750 −2.19 0.91 0.94
    1870–1990 −2.25 0.66 0.31
    2010–2130 −0.85 0.96 0.46
  2 PB1 650–770 −1.67 0.81 0.39
    1100–1220 −0.57 0.97 0.31
  1 PB2 210–350 −2.82 (−3.12) 0.68 (0.69) 0.85 (0.94)
    670–810 −1.49 (−1.85) 0.83 (0.86) 0.38 (0.62)
    1320–1450 −2.50 (−2.51) 0.76 (0.81) 0.77 (0.91)
Influenza C 7 NS1, NEP 190–400 −2.16 (−3.55) 0.70 (0.82) 0.41 (0.99)
    640–800 −1.39 (−2.04) 0.83 (0.87) 0.31 (0.79)
  6 M1, CM2 0–160 −2.12 (−2.87) 0.86 (0.91) 0.72 (0.96)
    160–310 −1.13 (−1.36) 0.92 (0.93) 0.33 (0.54)
    350–470 −0.68 0.99 0.37
    450–680 −1.54 (−2.65) 0.96 (0.99) 0.65 (0.98)
    670–790 −1.05 0.97 0.54
    990–1133 −0.97 (−1.19) 0.98 0.54 (0.71)
  1. aProteins coded via splicing are italicized.
  2. bAverage values for overlapping windows with p-class <0.3. When the region is defined by more than one 120 nt window and the most favorable value for a 120 nt window differs from the average value of overlapping windows, it is presented in parentheses.