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Table 2 Microarray data gene ontology classifications

From: Butyrate induced changes in Wnt-signaling specific gene expression in colorectal cancer cells

Gene ontology
Microarray data gene ontology classifications
Category = the name of the category within the ontology.   
Genes in category = the total number of genes in the genome that have been assigned to the category   
Genes in list in category = the total number of genes both in the selected gene list and in the category.   
Biological process   
Category Genes in category Genes in list in category
GO:50769: positive regulation of neurogenesis 101 14
GO:51094: positive regulation of development 420 30
GO:50793: regulation of development 848 49
GO:45598: regulation of fat cell differentiation 59 9
GO:50772: positive regulation of axonogenesis 47 8
GO:1779: natural killer cell differentiation 4 3
GO:9991: response to extracellular stimulus 238 19
GO:50767: regulation of neurogenesis 280 21
GO:45600: positive regulation of fat cell differentiation 20 5
GO:45444: fat cell differentiation 126 12
GO:30844: positive regulation of intermediate filament depolymerization 2 2
GO:45108: regulation of intermediate filament polymerization and/or depolymerization 2 2
GO:30842: regulation of intermediate filament depolymerization 2 2
GO:45106: intermediate filament depolymerization 2 2
GO:45105: intermediate filament polymerization and/or depolymerization 2 2
GO:48541: Peyer’s patch development 7 3
GO:50789: regulation of biological process 8048 292
GO:31667: response to nutrient levels 211 16
GO:1764: neuron migration 85 9
GO:48537: mucosal-associated lymphoid tissue development 8 3
GO:9892: negative regulation of metabolism 1238 58
GO:45595: regulation of cell differentiation 612 33
GO:51093: negative regulation of development 292 19
GO:6066: alcohol metabolism 576 31
GO:31324: negative regulation of cellular metabolism 1126 52
GO:31668: cellular response to extracellular stimulus 64 7
GO:30901: midbrain development 34 5
GO:48715: negative regulation of oligodendrocyte differentiation 11 3
GO:9912: auditory receptor cell fate commitment 4 2
GO:31670: cellular response to nutrient 4 2
GO:19221: cytokine and chemokine mediated signaling pathway 249 16
GO:42423: catecholamine biosynthesis 24 4
GO:1709: cell fate determination 38 5
GO:6260: DNA replication 343 20
GO:8089: anterograde axon cargo transport 13 3
GO:50768: negative regulation of neurogenesis 89 8
GO:30879: mammary gland development 39 5
GO:45773: positive regulation of axon extension 25 4
GO:45686: negative regulation of glial cell differentiation 25 4
GO:17085: response to insecticide 25 4
GO:50770: regulation of axonogenesis 91 8
GO:15879: carnitine transport 14 3
GO:19800: peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 5 2
GO:48732: gland development 113 9
Cellular component   
Category Genes in category Genes in list in category
GO:5622: intracellular 16495 558
GO:43229: intracellular organelle 13641 467
GO:43226: organelle 13647 467
GO:797: condensin core heterodimer 2 2
GO:43232: intracellular non-membrane-bound organelle 4379 168
GO:43228: non-membrane-bound organelle 4379 168
GO:796: condensin complex 9 3
GO:5856: cytoskeleton 2219 92
GO:15630: microtubule cytoskeleton 1021 48
GO:5813: centrosome 467 26
GO:118: histone deacetylase complex 72 7
GO:43231: intracellular membrane-bound organelle 12378 415
GO:43227: membrane-bound organelle 12386 415
GO:16272: prefoldin complex 14 3
GO:31618: nuclear centric heterochromatin 5 2
GO:5882: intermediate filament 223 14
Molecular function   
Category Genes in category Genes in list in category
GO:5096: GTPase activator activity 397 25
GO:8118: N-acetyllactosaminide alpha-2,3-sialyltransferase activity 3 2
GO:16861: intramolecular oxidoreductase activity, interconverting aldoses and ketoses 11 3
GO:4873: asialoglycoprotein receptor activity 4 2
GO:8307: structural constituent of muscle 70 7
GO:8047: enzyme activator activity 573 30
GO:19894: kinesin binding 25 4
GO:31730: CCR5 chemokine receptor binding 5 2
GO:17123: Ral GTPase activator activity 5 2
  1. Clusters of genes whose expression is modulated as described in Figure 3 and Table 1, grouped into functionally relevant categories.
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