FGAP: an automated gap closing tool

BMC Research Notes

Table 1 E. coli assemblies

	k-mer	Gaps	Sequences	Size (bp)	N50 (bp)
Illumina(pe) + 454(se) [Draft]	81	123	41(s)/32(c)	4554392	172167
454(se) [Dataset]	99	0	12407(c)	6274970	531
Illumina(se) [Dataset]	81	0	564(c)	4615235	63640

Datasets were assembled with single-end reads, generating only contigs; pe: paired-end; se: single-end; s: scaffolds; c: contigs.

ISSN: 1756-0500