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Table 4 Software comparison in human chromosome 14 assembly

From: FGAP: an automated gap closing tool

 

Original assembly

FGAP

GapCloser

GapFiller

IMAGE

Nº of gaps

4307

2780

2799

3690

3840

Nº contigs (≥ 1000 bp)

4386

2880

2930

3796

3979

Local misassemblies

215

296

386

339

301

Complete + partial genes

1064 + 497

1141 + 423

1121 + 448

1093 + 468

1078 + 488

N50

38359

61874

58014

45825

42385

Inserted bases (bp)

-

244379

1165698

421831

373900

Execution time

-

3 h 11 m

1 h 10 m

8 h 09 m

50 h 45 m

  1. The evaluation was performed by QUAST script v2.3 [16] (all metrics are in Additional file 1). The gene number was calculated based on a reference list with 1655 genes.