SINE family
|
No. of SINE members in B. rapa (283 Mb) genome
|
No. of SINE members in B. oleracea (385 Mb) genome
|
Copies in A. thaliana (119 Mb)
|
---|
Total
|
Intergenic spacea
|
Near geneb
|
Elements in genic regions
|
Un mappedd
|
Total
|
Intergenic spacea
|
Near geneb
|
Elements in genic regions
|
---|
5’ UTRc
|
CDS
|
Intron
|
3’ UTRc
|
5’ UTRc
|
CDS
|
Intron
|
3’ UTRc
|
---|
SB-1
|
3
|
3
|
0
|
0
|
0
|
0
|
0
|
0
|
98
|
49
|
32
|
7
|
0
|
4
|
6
|
0
|
SB-2
|
43
|
2
|
0
|
2
|
0
|
38
|
1
|
0
|
59
|
8
|
4
|
0
|
0
|
45
|
2
|
132
|
SB-3
|
134
|
70
|
36
|
6
|
0
|
12
|
6
|
4
|
278
|
156
|
80
|
20
|
0
|
9
|
13
|
4
|
SB-4
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
38
|
SB-5
|
155
|
72
|
54
|
6
|
0
|
11
|
7
|
5
|
375
|
205
|
99
|
23
|
0
|
18
|
30
|
3
|
SB-6
|
248
|
134
|
71
|
12
|
0
|
7
|
14
|
10
|
394
|
213
|
132
|
21
|
0
|
7
|
21
|
28
|
SB-7
|
372
|
202
|
106
|
17
|
0
|
11
|
20
|
16
|
355
|
197
|
119
|
16
|
0
|
2
|
21
|
3
|
SB-8
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
80
|
28
|
26
|
14
|
0
|
2
|
10
|
0
|
SB-9
|
141
|
62
|
49
|
7
|
0
|
6
|
12
|
5
|
201
|
102
|
69
|
11
|
0
|
7
|
12
|
0
|
SB-10
|
16
|
5
|
10
|
0
|
0
|
0
|
0
|
1
|
134
|
67
|
48
|
7
|
0
|
6
|
6
|
0
|
SB-11
|
4
|
4
|
0
|
0
|
0
|
0
|
0
|
0
|
56
|
22
|
25
|
3
|
0
|
2
|
4
|
0
|
SB-12
|
10
|
5
|
3
|
0
|
0
|
2
|
0
|
0
|
101
|
46
|
37
|
7
|
0
|
5
|
6
|
0
|
SB-13
|
1
|
0
|
1
|
0
|
0
|
0
|
0
|
0
|
95
|
43
|
30
|
7
|
0
|
7
|
8
|
0
|
SB-14
|
142
|
69
|
43
|
9
|
0
|
12
|
8
|
1
|
137
|
74
|
37
|
10
|
0
|
6
|
10
|
0
|
SB-15
|
1
|
1
|
0
|
0
|
0
|
0
|
0
|
0
|
1
|
0
|
0
|
0
|
1
|
0
|
0
|
0
|
SB-16
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
4
|
Total
|
1270
|
629
|
373
|
59
|
0
|
99
|
68
|
42
|
2364
|
1210
|
738
|
146
|
1
|
120
|
149
|
212
|
- aMITE members categorized by their insertion >2 kb from the nearest gene.
- bMITE members categorized by their insertion 500–2000 bp from the nearest gene.
- cMITE members resid in the 500 bp upstream (5’UTR) or downstream (3’UTR) of the start or stop codon, respectively.
- dMITE members found in unanchored scaffolds of the B. rapa genome.