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Table 2 Characteristics of 16 SINE families in the B . rapa and B . oleracea genomes

From: BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species

SINE family No. of SINE members in B. rapa (283 Mb) genome No. of SINE members in B. oleracea (385 Mb) genome Copies in A. thaliana (119 Mb)
Total Intergenic spacea Near geneb Elements in genic regions Un mappedd Total Intergenic spacea Near geneb Elements in genic regions
5’ UTRc CDS Intron 3’ UTRc 5’ UTRc CDS Intron 3’ UTRc
SB-1 3 3 0 0 0 0 0 0 98 49 32 7 0 4 6 0
SB-2 43 2 0 2 0 38 1 0 59 8 4 0 0 45 2 132
SB-3 134 70 36 6 0 12 6 4 278 156 80 20 0 9 13 4
SB-4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38
SB-5 155 72 54 6 0 11 7 5 375 205 99 23 0 18 30 3
SB-6 248 134 71 12 0 7 14 10 394 213 132 21 0 7 21 28
SB-7 372 202 106 17 0 11 20 16 355 197 119 16 0 2 21 3
SB-8 0 0 0 0 0 0 0 0 80 28 26 14 0 2 10 0
SB-9 141 62 49 7 0 6 12 5 201 102 69 11 0 7 12 0
SB-10 16 5 10 0 0 0 0 1 134 67 48 7 0 6 6 0
SB-11 4 4 0 0 0 0 0 0 56 22 25 3 0 2 4 0
SB-12 10 5 3 0 0 2 0 0 101 46 37 7 0 5 6 0
SB-13 1 0 1 0 0 0 0 0 95 43 30 7 0 7 8 0
SB-14 142 69 43 9 0 12 8 1 137 74 37 10 0 6 10 0
SB-15 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0
SB-16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
Total 1270 629 373 59 0 99 68 42 2364 1210 738 146 1 120 149 212
  1. aMITE members categorized by their insertion >2 kb from the nearest gene.
  2. bMITE members categorized by their insertion 500–2000 bp from the nearest gene.
  3. cMITE members resid in the 500 bp upstream (5’UTR) or downstream (3’UTR) of the start or stop codon, respectively.
  4. dMITE members found in unanchored scaffolds of the B. rapa genome.