Table 3 Summary of integrated information in the animal disease-miRNA resource
From: Computational prediction of disease microRNAs in domestic animals
Information | Specific information |
|---|---|
MicroRNA | 1. Mature miRNA ID |
2. Mature miRNA AC | |
3. Mature RNA sequence | |
4. Pre-miRNA/Hairpin ID | |
5. Pre-miRNA/Hairpin AC | |
6. Pre-miRNA/Hairpin sequence | |
7. Family ID | |
8. Family AC | |
Location | 9. Chromosome number |
10. Genomic coordinates (start & end) | |
11. Strand (positive or negative) | |
Reference | 12. Pubmed ID |
13. Pubmed Central ID (indicates free articles) | |
14. Pubmed title | |
15. Pubmed publication date | |
Disease | 16. Disease phenotype (reported in Pubmed article) |
17. Relevance in animal (for non-domestic animal diseases) | |
18. OMIM/OMIA disease phenotype name | |
19. OMIM/OMIA disease phenotype ID | |
20. Disease Ontology (DO) | |
21. Tissue/Cell type (source of samples used) | |
22. Brenda Tissue Ontology (BTO) name | |
23. BTO ID | |
24. Method used to associate a disease with a miRNA | |
Target | 25. Gene targeted by the disease miRNA |
26. Animal ortholog of targeted gene | |
27. Reciprocal% identity of target:ortholog | |
28. Orthology_confidence[0 low,1 high] |