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Table 1 Parameters for tree traversals and display of traversal results

From: Suffix tree searcher: exploration of common substrings in large DNA sequence sets

  Setting Explanation
Traversal settings LCS occurrences Gather LCSs occurring for n = 2, … up to the number specified by this setting
  LCS inputs Gather the single LCS in k = 2, … input sequences up to the number specified by this setting
  Number of occurrences For each number n specified, fetch the p longest LCSs occurring exactly n times, regardless of input sequence
  Number of inputs For each number n specified, fetch the p longest LCSs occurring at least once
  Sets Fetch the p best results for each set of input sequences as specified by this setting. Sets are specified with braces. e.g. {2}{2,3}{2,3,4}{2,4}{5,6}
  All singles Gather a separate result set for each input sequence.
  All pairs Gather a separate result set for each possible pair of input sequences
Traversal results display Threshold length Common substrings must be of at least this length to show up in result sets
  Display length Display LCSs only up to and including this length in the result sets
  Max results For the non-standard result sets, restrict table size to this many rows
  Reference genome Gather result sets only for queries involving this input sequence