Table 1 Parameters for tree traversals and display of traversal results

Traversal settings

LCS occurrences

Gather LCSs occurring for n = 2, … up to the number specified by this setting

LCS inputs

Gather the single LCS in k = 2, … input sequences up to the number specified by this setting

Number of occurrences

For each number n specified, fetch the p longest LCSs occurring exactly n times, regardless of input sequence

Number of inputs

For each number n specified, fetch the p longest LCSs occurring at least once

Sets

Fetch the p best results for each set of input sequences as specified by this setting. Sets are specified with braces. e.g. {2}{2,3}{2,3,4}{2,4}{5,6}

All singles

Gather a separate result set for each input sequence.

All pairs

Gather a separate result set for each possible pair of input sequences

Traversal results display

Threshold length

Common substrings must be of at least this length to show up in result sets

Display length

Display LCSs only up to and including this length in the result sets

Max results

For the non-standard result sets, restrict table size to this many rows

Reference genome

Gather result sets only for queries involving this input sequence