Segment | AUG context | Strenght |
---|
1 | CUAA GAAUG G | Optimal + 0 |
2 | AUAA CC AUG G | Optimal + 2 |
3 | UAAG AGAUG G | Optimal + 0 |
4 | UUC A AGAUG G | Optimal + 1 |
5 | UUAA AGAUG G | Optimal + 0 |
6 | GC AA AGAUG G | Optimal + 2 |
7 | UC UA C AAUG G | Optimal + 2 |
8 ORF 1 (R, N) | UUUA CC AUG A | Strong + 2 |
8 ORF 1 (3, 9, A, G) | UC UA CC AUG A | Strong + 3 |
8 ORF 2 | AUC A C AAUG G | Optimal + 2 |
- Segments 1 to 7 have an optimal sequence for the initiation of protein synthesis; differences were observed only in the number of non-critical nucleotides. ORF 1 of segment 8 has a strong sequence for the initiation of protein synthesis and has 2 variants. The presence of nucleotides matching the Kozak consensus is indicated as follows: bold letters, critical nucleotides; bold-italics, non-critical nucleotides; italics, AUG codon.