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Figure 1 | BMC Research Notes

Figure 1

From: Employing whole genome mapping for optimal de novo assembly of bacterial genomes

Figure 1

Alignment of contigs to the corresponding whole genome map: A) Velvet derived assembly using k-mer size 93, revealing no mis-assemblies; B) Velvet derived assembly using k-mer size 115, corresponding to the highest N50, but revealing mis-assemblies; C: SPAdes derived assembly using a multi- k-mer approach up to k-mer size 83, yielding the optimal N50 for this sequence and showing no mis-assemblies; D: SPAdes derived assembly using a multi- k-mer approach up to k-mer size 77, yielding the optimal N50 for this sequence, but showing mis-assemblies.

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