TY - JOUR AU - Belnap, J. PY - 2003 DA - 2003// TI - The world at your feet: desert biological soil crusts JO - Front Ecol Environ VL - 1 UR - https://doi.org/10.1890/1540-9295(2003)001[0181:TWAYFD]2.0.CO;2 DO - 10.1890/1540-9295(2003)001[0181:TWAYFD]2.0.CO;2 ID - Belnap2003 ER - TY - JOUR AU - Pointing, S. B. AU - Belnap, J. PY - 2012 DA - 2012// TI - Microbial colonization and controls in dryland systems JO - Nat Rev Microbiol VL - 10 UR - https://doi.org/10.1038/nrmicro2831 DO - 10.1038/nrmicro2831 ID - Pointing2012 ER - TY - JOUR AU - Rajeev, L. AU - da Rocha, U. N. AU - Klitgord, N. AU - Luning, E. G. AU - Fortney, J. AU - Axen, S. D. AU - Shih, P. M. AU - Bouskill, N. J. AU - Bowen, B. P. AU - Kerfeld, C. A. AU - Garcia-Pichel, F. AU - Brodie, E. L. AU - Northen, T. R. AU - Mukhopadhyay, A. PY - 2013 DA - 2013// TI - Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust JO - ISME J VL - 7 UR - https://doi.org/10.1038/ismej.2013.83 DO - 10.1038/ismej.2013.83 ID - Rajeev2013 ER - TY - CHAP AU - Belnap, J. AU - Büdel, B. AU - Lange, O. L. ED - Belnap, J. ED - Lange, O. PY - 2003 DA - 2003// TI - Biological soil crusts: characteristics and distribution BT - Biological Soil Crusts: Structure, Function, and Management, vol. 150 PB - Springer CY - Berlin Heidelberg UR - https://doi.org/10.1007/978-3-642-56475-8 DO - 10.1007/978-3-642-56475-8 ID - Belnap2003 ER - TY - JOUR AU - Belnap, J. AU - Gillette, D. A. PY - 1998 DA - 1998// TI - Vulnerability of desert biological soil crusts to wind erosion: the influences of crust development, soil texture, and disturbance JO - J Arid Environ VL - 39 UR - https://doi.org/10.1006/jare.1998.0388 DO - 10.1006/jare.1998.0388 ID - Belnap1998 ER - TY - JOUR AU - Oliver, M. J. AU - Velten, J. AU - Mishler, B. D. PY - 2005 DA - 2005// TI - Desiccation tolerance in bryophytes: a reflection of the primitive strategy for plant survival in dehydrating habitats? JO - Integr Comp Biol VL - 45 UR - https://doi.org/10.1093/icb/45.5.788 DO - 10.1093/icb/45.5.788 ID - Oliver2005 ER - TY - JOUR AU - Proctor, M. C. F. AU - Oliver, M. J. AU - Wood, A. J. AU - Alpert, P. AU - Stark, L. R. AU - Cleavitt, N. L. AU - Mishler, B. D. PY - 2007 DA - 2007// TI - Desiccation-tolerance in bryophytes: a review JO - Bryologist VL - 110 UR - https://doi.org/10.1639/0007-2745(2007)110[595:DIBAR]2.0.CO;2 DO - 10.1639/0007-2745(2007)110[595:DIBAR]2.0.CO;2 ID - Proctor2007 ER - TY - JOUR AU - Oliver, M. AU - Tuba, Z. AU - Mishler, B. PY - 2000 DA - 2000// TI - The evolution of vegetative desiccation tolerance in land plants JO - Plant Ecol VL - 151 UR - https://doi.org/10.1023/A:1026550808557 DO - 10.1023/A:1026550808557 ID - Oliver2000 ER - TY - JOUR AU - Wood, A. J. PY - 2007 DA - 2007// TI - The nature and distribution of vegetative desiccation-tolerance in hornworts, liverworts and mosses JO - Bryologist VL - 110 UR - https://doi.org/10.1639/0007-2745(2007)110[163:IENFIB]2.0.CO;2 DO - 10.1639/0007-2745(2007)110[163:IENFIB]2.0.CO;2 ID - Wood2007 ER - TY - JOUR AU - Bewley, J. D. PY - 1979 DA - 1979// TI - Physiological aspects of desiccation tolerance JO - Annu Rev Plant Physiol VL - 30 UR - https://doi.org/10.1146/annurev.pp.30.060179.001211 DO - 10.1146/annurev.pp.30.060179.001211 ID - Bewley1979 ER - TY - CHAP AU - Oliver, M. J. AU - Derek Bewley, J. PY - 2010 DA - 2010// TI - Desiccation-tolerance of plant tissues: a mechanistic overview BT - Horticultural Reviews PB - Sons, Inc CY - Oxford, UK UR - https://doi.org/10.1002/9780470650608.ch3 DO - 10.1002/9780470650608.ch3 ID - Oliver2010 ER - TY - JOUR AU - Stark, L. R. AU - Brinda, J. C. AU - McLetchie, D. N. AU - Oliver, M. J. PY - 2012 DA - 2012// TI - Extended periods of hydration Do Not elicit dehardening to desiccation tolerance in regeneration trials of the moss Syntrichia caninervis JO - Int J Plant Sci VL - 173 UR - https://doi.org/10.1086/663970 DO - 10.1086/663970 ID - Stark2012 ER - TY - JOUR AU - Zhang, Y. M. AU - Chen, J. AU - Wang, L. AU - Wang, X. Q. AU - Gu, Z. H. PY - 2007 DA - 2007// TI - The spatial distribution patterns of biological soil crusts in the Gurbantunggut Desert, Northern Xinjiang, China JO - J Arid Environ VL - 68 UR - https://doi.org/10.1016/j.jaridenv.2006.06.012 DO - 10.1016/j.jaridenv.2006.06.012 ID - Zhang2007 ER - TY - JOUR AU - Wu, N. AU - Zhang, Y. M. AU - Downing, A. AU - Zhang, J. AU - Yang, C. PY - 2012 DA - 2012// TI - Membrane stability of the desert moss Syntrichia caninervis Mitt. during desiccation and rehydration JO - J Bryol VL - 34 UR - https://doi.org/10.1179/1743282011Y.0000000043 DO - 10.1179/1743282011Y.0000000043 ID - Wu2012 ER - TY - JOUR AU - Zheng, Y. AU - Xu, M. AU - Zhao, J. AU - Zhang, B. AU - Bei, S. AU - Hao, L. PY - 2011 DA - 2011// TI - Morphological adaptations to drought and reproductive strategy of the moss Syntrichia caninervis in the gurbantunggut desert JO - China Arid Land Res Manag VL - 25 UR - https://doi.org/10.1080/15324982.2011.554956 DO - 10.1080/15324982.2011.554956 ID - Zheng2011 ER - TY - JOUR AU - Li, Y. AU - Wang, Z. AU - Xu, T. AU - Tu, W. AU - Liu, C. AU - Zhang, Y. AU - Yang, C. PY - 2010 DA - 2010// TI - Reorganization of photosystem II is involved in the rapid photosynthetic recovery of desert moss Syntrichia caninervis upon rehydration JO - J Plant Physiol VL - 167 UR - https://doi.org/10.1016/j.jplph.2010.05.028 DO - 10.1016/j.jplph.2010.05.028 ID - Li2010 ER - TY - JOUR AU - Platt, K. A. AU - Oliver, M. J. AU - Thomson, W. W. PY - 1994 DA - 1994// TI - Membranes and organelles of dehydrated Selaginella and Tortula retain their normal configuration and structural integrity JO - Protoplasma VL - 178 UR - https://doi.org/10.1007/BF01404121 DO - 10.1007/BF01404121 ID - Platt1994 ER - TY - JOUR AU - Proctor, M. C. F. AU - Ligrone, R. AU - Duckett, J. G. PY - 2007 DA - 2007// TI - Desiccation tolerance in the moss polytrichum formosum: physiological and fine-structural changes during desiccation and recovery JO - Ann Bot VL - 99 UR - https://doi.org/10.1093/aob/mcl246 DO - 10.1093/aob/mcl246 ID - Proctor2007 ER - TY - JOUR AU - Proctor, M. C. F. AU - Smirnoff, N. PY - 2000 DA - 2000// TI - Rapid recovery of photosystems on rewetting desiccation-tolerant mosses: chlorophyll fluorescence and inhibitor experiments JO - J Exp Bot VL - 51 UR - https://doi.org/10.1093/jexbot/51.351.1695 DO - 10.1093/jexbot/51.351.1695 ID - Proctor2000 ER - TY - JOUR AU - Wu, N. AU - Zhang, Y. -. m. AU - Downing, A. AU - Aanderud, Z. T. AU - Tao, Y. AU - Williams, S. PY - 2014 DA - 2014// TI - Rapid adjustment of leaf angle explains how the desert moss, Syntrichia caninervis, copes with multiple resource limitations during rehydration JO - Funct Plant Biol VL - 41 UR - https://doi.org/10.1071/FP13054 DO - 10.1071/FP13054 ID - Wu2014 ER - TY - JOUR AU - Xu, S. -. J. AU - Jiang, P. -. A. AU - Wang, Z. -. W. AU - Wang, Y. PY - 2009 DA - 2009// TI - Crystal structures and chemical composition of leaf surface wax depositions on the desert moss Syntrichia caninervis JO - Biochem Syst Ecol VL - 37 UR - https://doi.org/10.1016/j.bse.2009.12.012 DO - 10.1016/j.bse.2009.12.012 ID - Xu2009 ER - TY - JOUR AU - Stark, L. R. AU - McLetchie, D. N. AU - Roberts, S. P. PY - 2009 DA - 2009// TI - Gender differences and a new adult eukaryotic record for upper thermal tolerance in the desert moss Syntrichia caninervis JO - J Therm Biol VL - 34 UR - https://doi.org/10.1016/j.jtherbio.2008.12.001 DO - 10.1016/j.jtherbio.2008.12.001 ID - Stark2009 ER - TY - JOUR AU - Cove, D. J. AU - Perroud, P. -. F. AU - Charron, A. J. AU - McDaniel, S. F. AU - Khandelwal, A. AU - Quatrano, R. S. PY - 2009 DA - 2009// TI - The moss Physcomitrella patens: a novel model system for plant development and genomic studies JO - Cold Spring Harb Protoc VL - 2009 ID - Cove2009 ER - TY - JOUR AU - Rensing, S. A. AU - Lang, D. AU - Zimmer, A. D. AU - Terry, A. AU - Salamov, A. AU - Shapiro, H. AU - Nishiyama, T. AU - Perroud, P. F. AU - Lindquist, E. A. AU - Kamisugi, Y. AU - Tanahashi, T. AU - Sakakibara, K. AU - Fujita, T. AU - Oishi, K. AU - Shin, I. T. AU - Kuroki, Y. AU - Toyoda, A. AU - Suzuki, Y. AU - Hashimoto, S. AU - Yamaguchi, K. AU - Sugano, S. AU - Kohara, Y. AU - Fujiyama, A. AU - Anterola, A. AU - Aoki, S. AU - Ashton, N. AU - Barbazuk, W. B. AU - Barker, E. AU - Bennetzen, J. L. AU - Blankenship, R. PY - 2008 DA - 2008// TI - The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants JO - Science VL - 319 UR - https://doi.org/10.1126/science.1150646 DO - 10.1126/science.1150646 ID - Rensing2008 ER - TY - JOUR AU - Wood, A. J. AU - Duff, R. J. PY - 2009 DA - 2009// TI - The Aldehyde Dehydrogenase (ALDH) gene Superfamily of the Moss Physcomitrella patens and the algae Chlamydomonas reinhardtii and Ostreococcus tauri JO - Bryologist VL - 112 UR - https://doi.org/10.1639/0007-2745-112.1.1 DO - 10.1639/0007-2745-112.1.1 ID - Wood2009 ER - TY - JOUR AU - Carretero-Paulet, L. AU - Galstyan, A. AU - Roig-Villanova, I. AU - Martinez-Garcia, J. F. AU - Bilbao-Castro, J. R. AU - Robertson, D. L. PY - 2010 DA - 2010// TI - Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae JO - Plant Physiol VL - 153 UR - https://doi.org/10.1104/pp.110.153593 DO - 10.1104/pp.110.153593 ID - Carretero-Paulet2010 ER - TY - JOUR AU - Koduri, P. K. AU - Gordon, G. S. AU - Barker, E. I. AU - Colpitts, C. C. AU - Ashton, N. W. AU - Suh, D. Y. PY - 2010 DA - 2010// TI - Genome-wide analysis of the chalcone synthase superfamily genes of Physcomitrella patens JO - Plant Mol Biol VL - 72 UR - https://doi.org/10.1007/s11103-009-9565-z DO - 10.1007/s11103-009-9565-z ID - Koduri2010 ER - TY - JOUR AU - Barker, E. I. AU - Ashton, N. W. PY - 2013 DA - 2013// TI - A parsimonious model of lineage-specific expansion of MADS-box genes in Physcomitrella patens JO - Plant Cell Rep VL - 32 UR - https://doi.org/10.1007/s00299-013-1411-8 DO - 10.1007/s00299-013-1411-8 ID - Barker2013 ER - TY - JOUR AU - Koster, K. AU - Balsamo, R. AU - Espinoza, C. AU - Oliver, M. PY - 2010 DA - 2010// TI - Desiccation sensitivity and tolerance in the moss Physcomitrella patens: assessing limits and damage JO - Plant Growth Regul VL - 62 UR - https://doi.org/10.1007/s10725-010-9490-9 DO - 10.1007/s10725-010-9490-9 ID - Koster2010 ER - TY - JOUR AU - Liu, M. AU - Shi, J. AU - Lu, C. PY - 2013 DA - 2013// TI - Identification of stress-responsive genes in Ammopiptanthus mongolicus using ESTs generated from cold- and drought-stressed seedlings JO - BMC Plant Biol VL - 13 UR - https://doi.org/10.1186/1471-2229-13-88 DO - 10.1186/1471-2229-13-88 ID - Liu2013 ER - TY - JOUR AU - Zhao, Z. AU - Tan, L. AU - Dang, C. AU - Zhang, H. AU - Wu, Q. AU - An, L. PY - 2012 DA - 2012// TI - Deep-sequencing transcriptome analysis of chilling tolerance mechanisms of a subnival alpine plant. Chorispora bungeana JO - BMC Plant Biol VL - 12 UR - https://doi.org/10.1186/1471-2229-12-222 DO - 10.1186/1471-2229-12-222 ID - Zhao2012 ER - TY - JOUR AU - Xiao, L. AU - Wang, H. AU - Wan, P. AU - Kuang, T. AU - He, Y. PY - 2011 DA - 2011// TI - Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens JO - BMC Plant Biol VL - 11 UR - https://doi.org/10.1186/1471-2229-11-177 DO - 10.1186/1471-2229-11-177 ID - Xiao2011 ER - TY - JOUR AU - Xiao, L. AU - Zhang, L. AU - Yang, G. AU - Zhu, H. AU - He, Y. PY - 2012 DA - 2012// TI - Transcriptome of protoplasts reprogrammed into stem cells in Physcomitrella patens JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0035961 DO - 10.1371/journal.pone.0035961 ID - Xiao2012 ER - TY - JOUR AU - Sharma, N. AU - Bhalla, P. L. AU - Singh, M. B. PY - 2013 DA - 2013// TI - Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort. Marchantia polymorpha JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-915 DO - 10.1186/1471-2164-14-915 ID - Sharma2013 ER - TY - JOUR AU - Liu, S. AU - Wang, N. AU - Zhang, P. AU - Cong, B. AU - Lin, X. AU - Wang, S. AU - Xia, G. AU - Huang, X. PY - 2013 DA - 2013// TI - Next-generation sequencing-based transcriptome profiling analysis of Pohlia nutans reveals insight into the stress-relevant genes in Antarctic moss JO - Extremophiles VL - 17 UR - https://doi.org/10.1007/s00792-013-0528-6 DO - 10.1007/s00792-013-0528-6 ID - Liu2013 ER - TY - JOUR AU - Oliver, M. AU - Dowd, S. AU - Zaragoza, J. AU - Mauget, S. AU - Payton, P. PY - 2004 DA - 2004// TI - The rehydration transcriptome of the desiccation-tolerant bryophyte Tortula ruralis: transcript classification and analysis JO - BMC Genomics VL - 5 UR - https://doi.org/10.1186/1471-2164-5-89 DO - 10.1186/1471-2164-5-89 ID - Oliver2004 ER - TY - JOUR AU - Wood, A. J. AU - Duff, R. J. AU - Oliver, M. J. PY - 1999 DA - 1999// TI - Expressed sequence tags (ESTs) from desiccated Tortula ruralis identify a large number of novel plant genes JO - Plant Cell Physiol VL - 40 UR - https://doi.org/10.1093/oxfordjournals.pcp.a029551 DO - 10.1093/oxfordjournals.pcp.a029551 ID - Wood1999 ER - TY - JOUR AU - Metzker, M. L. PY - 2010 DA - 2010// TI - Sequencing technologies - the next generation JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2626 DO - 10.1038/nrg2626 ID - Metzker2010 ER - TY - JOUR AU - Mortazavi, A. AU - Williams, B. A. AU - McCue, K. AU - Schaeffer, L. AU - Wold, B. PY - 2008 DA - 2008// TI - Mapping and quantifying mammalian transcriptomes by RNA-Seq JO - Nat Meth VL - 5 UR - https://doi.org/10.1038/nmeth.1226 DO - 10.1038/nmeth.1226 ID - Mortazavi2008 ER - TY - JOUR AU - Wang, Z. AU - Gerstein, M. AU - Snyder, M. PY - 2009 DA - 2009// TI - RNA-Seq: a revolutionary tool for transcriptomics JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2484 DO - 10.1038/nrg2484 ID - Wang2009 ER - TY - JOUR AU - Grabherr, M. G. AU - Haas, B. J. AU - Yassour, M. AU - Levin, J. Z. AU - Thompson, D. A. AU - Amit, I. AU - Adiconis, X. AU - Fan, L. AU - Raychowdhury, R. AU - Zeng, Q. AU - Chen, Z. AU - Mauceli, E. AU - Hacohen, N. AU - Gnirke, A. AU - Rhind, N. AU - di Palma, F. AU - Birren, B. W. AU - Nusbaum, C. AU - Lindblad-Toh, K. AU - Friedman, N. AU - Regev, A. PY - 2011 DA - 2011// TI - Full-length transcriptome assembly from RNA-Seq data without a reference genome JO - Nat Biotech VL - 29 UR - https://doi.org/10.1038/nbt.1883 DO - 10.1038/nbt.1883 ID - Grabherr2011 ER - TY - JOUR AU - O’Neil, S. AU - Dzurisin, J. AU - Carmichael, R. AU - Lobo, N. AU - Emrich, S. AU - Hellmann, J. PY - 2010 DA - 2010// TI - Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-310 DO - 10.1186/1471-2164-11-310 ID - O’Neil2010 ER - TY - JOUR AU - Zimmer, A. AU - Lang, D. AU - Buchta, K. AU - Rombauts, S. AU - Nishiyama, T. AU - Hasebe, M. AU - Van de Peer, Y. AU - Rensing, S. AU - Reski, R. PY - 2013 DA - 2013// TI - Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-498 DO - 10.1186/1471-2164-14-498 ID - Zimmer2013 ER - TY - JOUR AU - Pallavicini, A. AU - Canapa, A. AU - Barucca, M. AU - Alf Ldi, J. AU - Biscotti, M. A. AU - Buonocore, F. AU - De Moro, G. AU - Di Palma, F. AU - Fausto, A. M. AU - Forconi, M. AU - Gerdol, M. AU - Makapedua, D. M. AU - Turner-Meier, J. AU - Olmo, E. AU - Scapigliati, G. PY - 2013 DA - 2013// TI - Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-538 DO - 10.1186/1471-2164-14-538 ID - Pallavicini2013 ER - TY - JOUR AU - Xu, J. AU - Ji, P. AU - Wang, B. AU - Zhao, L. AU - Wang, J. AU - Zhao, Z. AU - Zhang, Y. AU - Li, J. AU - Xu, P. AU - Sun, X. PY - 2013 DA - 2013// TI - Transcriptome sequencing and analysis of wild Amur Ide (Leuciscus waleckii) inhabiting an extreme alkaline-saline lake reveals insights into stress adaptation JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0059703 DO - 10.1371/journal.pone.0059703 ID - Xu2013 ER - TY - JOUR AU - Ewen-Campen, B. AU - Shaner, N. AU - Panfilio, K. A. AU - Suzuki, Y. AU - Roth, S. AU - Extavour, C. G. PY - 2011 DA - 2011// TI - The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-61 DO - 10.1186/1471-2164-12-61 ID - Ewen-Campen2011 ER - TY - JOUR AU - Nishiyama, T. AU - Fujita, T. AU - Shin-I, T. AU - Seki, M. AU - Nishide, H. AU - Uchiyama, I. AU - Kamiya, A. AU - Carninci, P. AU - Hayashizaki, Y. AU - Shinozaki, K. AU - Kohara, Y. AU - Hasebe, M. PY - 2003 DA - 2003// TI - Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution JO - Proc Natl Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.0932694100 DO - 10.1073/pnas.0932694100 ID - Nishiyama2003 ER - TY - JOUR AU - Conesa, A. AU - Götz, S. AU - García-Gómez, J. M. AU - Terol, J. AU - Talón, M. AU - Robles, M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER - TY - JOUR AU - Lang, D. AU - Zimmer, A. D. AU - Rensing, S. A. AU - Reski, R. PY - 2008 DA - 2008// TI - Exploring plant biodiversity: the Physcomitrella genome and beyond JO - Trends Plant Sci VL - 13 UR - https://doi.org/10.1016/j.tplants.2008.07.002 DO - 10.1016/j.tplants.2008.07.002 ID - Lang2008 ER - TY - JOUR AU - Punta, M. AU - Coggill, P. C. AU - Eberhardt, R. Y. AU - Mistry, J. AU - Tate, J. AU - Boursnell, C. AU - Pang, N. AU - Forslund, K. AU - Ceric, G. AU - Clements, J. AU - Heger, A. AU - Holm, L. AU - Sonnhammer, E. L. AU - Eddy, S. R. AU - Bateman, A. AU - Finn, R. D. PY - 2012 DA - 2012// TI - The Pfam protein families database JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1065 DO - 10.1093/nar/gkr1065 ID - Punta2012 ER - TY - JOUR AU - Lehti-Shiu, M. D. AU - Shiu, S. -. H. PY - 2012 DA - 2012// TI - Diversity, classification and function of the plant protein kinase superfamily JO - Philos Trans R Soc B: Biol Sci VL - 367 UR - https://doi.org/10.1098/rstb.2012.0003 DO - 10.1098/rstb.2012.0003 ID - Lehti-Shiu2012 ER - TY - JOUR AU - Xu, C. AU - Min, J. PY - 2011 DA - 2011// TI - Structure and function of WD40 domain proteins JO - Protein Cell VL - 2 UR - https://doi.org/10.1007/s13238-011-1018-1 DO - 10.1007/s13238-011-1018-1 ID - Xu2011 ER - TY - JOUR AU - Torii, K. U. PY - 2004 DA - 2004// TI - Leucine-rich repeat receptor kinases in plants: structure, function, and signal transduction pathways JO - Int Rev Cytol VL - 234 UR - https://doi.org/10.1016/S0074-7696(04)34001-5 DO - 10.1016/S0074-7696(04)34001-5 ID - Torii2004 ER - TY - JOUR AU - Mizutani, M. AU - Ohta, D. PY - 2010 DA - 2010// TI - Diversification of P450 genes during land plant evolution JO - Annu Rev Plant Biol VL - 61 UR - https://doi.org/10.1146/annurev-arplant-042809-112305 DO - 10.1146/annurev-arplant-042809-112305 ID - Mizutani2010 ER - TY - JOUR AU - Kang, J. AU - Park, J. AU - Choi, H. AU - Burla, B. AU - Kretzschmar, T. AU - Lee, Y. AU - Martinoia, E. PY - 2011 DA - 2011// TI - Plant ABC transporters JO - The Arabidopsis Book/American Society of Plant Biologists VL - 9 ID - Kang2011 ER - TY - JOUR AU - Kretzschmar, T. AU - Burla, B. AU - Lee, Y. AU - Martinoia, E. AU - Nagy, R. PY - 2011 DA - 2011// TI - Functions of ABC transporters in plants JO - Essays Biochem VL - 50 UR - https://doi.org/10.1042/bse0500145 DO - 10.1042/bse0500145 ID - Kretzschmar2011 ER - TY - JOUR AU - Jin, J. AU - Zhang, H. AU - Kong, L. AU - Gao, G. AU - Luo, J. PY - 2014 DA - 2014// TI - PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1016 DO - 10.1093/nar/gkt1016 ID - Jin2014 ER - TY - JOUR AU - Nakano, T. AU - Suzuki, K. AU - Fujimura, T. AU - Shinshi, H. PY - 2006 DA - 2006// TI - Genome-wide analysis of the ERF gene family in Arabidopsis and rice JO - Plant Physiol VL - 140 UR - https://doi.org/10.1104/pp.105.073783 DO - 10.1104/pp.105.073783 ID - Nakano2006 ER - TY - JOUR AU - Mitsuda, N. AU - Hisabori, T. AU - Takeyasu, K. AU - Sato, M. H. PY - 2004 DA - 2004// TI - VOZ; isolation and characterization of novel vascular plant transcription factors with a one-zinc finger from Arabidopsis thaliana JO - Plant Cell Physiol VL - 45 UR - https://doi.org/10.1093/pcp/pch101 DO - 10.1093/pcp/pch101 ID - Mitsuda2004 ER - TY - JOUR AU - Yasui, Y. AU - Mukougawa, K. AU - Uemoto, M. AU - Yokofuji, A. AU - Suzuri, R. AU - Nishitani, A. AU - Kohchi, T. PY - 2012 DA - 2012// TI - The phytochrome-interacting vascular plant one-zinc finger1 and VOZ2 redundantly regulate flowering in Arabidopsis JO - Plant Cell VL - 24 UR - https://doi.org/10.1105/tpc.112.101915 DO - 10.1105/tpc.112.101915 ID - Yasui2012 ER - TY - JOUR AU - Nakai, Y. AU - Nakahira, Y. AU - Sumida, H. AU - Takebayashi, K. AU - Nagasawa, Y. AU - Yamasaki, K. AU - Akiyama, M. AU - Ohme-Takagi, M. AU - Fujiwara, S. AU - Shiina, T. AU - Mitsuda, N. AU - Fukusaki, E. AU - Kubo, Y. AU - Sato, M. H. PY - 2013 DA - 2013// TI - Vascular plant one-zinc-finger protein 1/2 transcription factors regulate abiotic and biotic stress responses in Arabidopsis JO - Plant J VL - 73 UR - https://doi.org/10.1111/tpj.12069 DO - 10.1111/tpj.12069 ID - Nakai2013 ER - TY - JOUR AU - Putterill, J. AU - Robson, F. AU - Lee, K. AU - Simon, R. AU - Coupland, G. PY - 1995 DA - 1995// TI - The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors JO - Cell VL - 80 UR - https://doi.org/10.1016/0092-8674(95)90288-0 DO - 10.1016/0092-8674(95)90288-0 ID - Putterill1995 ER - TY - JOUR AU - Griffiths, S. AU - Dunford, R. P. AU - Coupland, G. AU - Laurie, D. A. PY - 2003 DA - 2003// TI - The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis JO - Plant Physiol VL - 131 UR - https://doi.org/10.1104/pp.102.016188 DO - 10.1104/pp.102.016188 ID - Griffiths2003 ER - TY - JOUR AU - Zobell, O. AU - Coupland, G. AU - Reiss, B. PY - 2005 DA - 2005// TI - The family of CONSTANS-like genes in Physcomitrella patens JO - Plant Biol (Stuttg) VL - 7 UR - https://doi.org/10.1055/s-2005-865621 DO - 10.1055/s-2005-865621 ID - Zobell2005 ER - TY - CHAP AU - Fischer, S. AU - Brunk, B. P. AU - Chen, F. AU - Gao, X. AU - Harb, O. S. AU - Iodice, J. B. AU - Shanmugam, D. AU - Roos, D. S. AU - Stoeckert, C. J. PY - 2011 DA - 2011// TI - Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups BT - Current protocols in bioinformatics/editoral board, Andreas DB[et al] ID - Fischer2011 ER - TY - JOUR AU - Oliver, M. AU - Wood, A. AU - O’Mahony, P. PY - 1997 DA - 1997// TI - How some plants recover from vegetative desiccation: a repair based strategy JO - Acta Physiol Plant VL - 19 UR - https://doi.org/10.1007/s11738-997-0038-1 DO - 10.1007/s11738-997-0038-1 ID - Oliver1997 ER - TY - JOUR AU - Velten, J. AU - Oliver, M. J. PY - 2001 DA - 2001// TI - Tr288, a rehydrin with a dehydrin twist JO - Plant Mol Biol VL - 45 UR - https://doi.org/10.1023/A:1010659120984 DO - 10.1023/A:1010659120984 ID - Velten2001 ER - TY - JOUR AU - Zeng, Q. AU - Chen, X. AU - Wood, A. J. PY - 2002 DA - 2002// TI - Two early light-inducible protein (ELIP) cDNAs from the resurrection plant Tortula ruralis are differentially expressed in response to desiccation, rehydration, salinity, and high light JO - J Exp Bot VL - 53 UR - https://doi.org/10.1093/jexbot/53.371.1197 DO - 10.1093/jexbot/53.371.1197 ID - Zeng2002 ER - TY - JOUR AU - Chen, X. AU - Zeng, Q. AU - Wood, A. J. PY - 2002 DA - 2002// TI - Aldh7B6 encodes a turgor-responsive aldehyde dehydrogenase homologue that is constitutively expressed in tortula ruralis gametophytes JO - Bryologist VL - 105 UR - https://doi.org/10.1639/0007-2745(2002)105[0177:AEATRA]2.0.CO;2 DO - 10.1639/0007-2745(2002)105[0177:AEATRA]2.0.CO;2 ID - Chen2002 ER - TY - JOUR AU - Chen, X. AU - Qin, Z. AU - Wood, A. J. PY - 2002 DA - 2002// TI - The stress-responsive Tortula ruralis gene ALDH21A1 describes a novel eukaryotic aldehyde dehydrogenase protein family JO - J Plant Physiol VL - 159 UR - https://doi.org/10.1078/0176-1617-0813 DO - 10.1078/0176-1617-0813 ID - Chen2002 ER - TY - JOUR AU - Chen, X. AU - Kanokporn, T. AU - Zeng, Q. AU - Wilkins, T. A. AU - Wood, A. J. PY - 2002 DA - 2002// TI - Characterization of the V-type H((+))-ATPase in the resurrection plant Tortula ruralis: accumulation and polysomal recruitment of the proteolipid c subunit in response to salt-stress JO - J Exp Bot VL - 53 UR - https://doi.org/10.1093/jexbot/53.367.225 DO - 10.1093/jexbot/53.367.225 ID - Chen2002 ER - TY - JOUR AU - Triwitayakorn, K. AU - Wood, A. PY - 2002 DA - 2002// TI - Characterisation of two desiccation-stress related cDNAs TrDr1 and TrDr2 in the resurrection moss Tortula ruralis JO - S Afr J Bot VL - 68 UR - https://doi.org/10.1016/S0254-6299(15)30383-5 DO - 10.1016/S0254-6299(15)30383-5 ID - Triwitayakorn2002 ER - TY - JOUR AU - Peng, C. A. AU - Oliver, M. J. AU - Wood, A. J. PY - 2005 DA - 2005// TI - Is the Rehydrin TrDr3 from Tortula ruralis associated with tolerance to cold, salinity, and reduced pH? Physiological evaluation of the TrDr3-orthologue, HdeD from Escherichia coli in response to abiotic stress JO - Plant Biol (Stuttg) VL - 7 UR - https://doi.org/10.1055/s-2005-865653 DO - 10.1055/s-2005-865653 ID - Peng2005 ER - TY - JOUR AU - Yang, H. AU - Zhang, D. AU - Wang, J. AU - Wood, A. J. AU - Zhang, Y. PY - 2012 DA - 2012// TI - Molecular cloning of a stress-responsive aldehyde dehydrogenase gene ScALDH21 from the desiccation-tolerant moss Syntrichia caninervis and its responses to different stresses JO - Mol Biol Rep VL - 39 UR - https://doi.org/10.1007/s11033-011-1017-6 DO - 10.1007/s11033-011-1017-6 ID - Yang2012 ER - TY - JOUR AU - Zhang, J. AU - Wu, K. AU - Zeng, S. AU - Teixeira da Silva, J. AU - Zhao, X. AU - Tian, C. -. E. AU - Xia, H. AU - Duan, J. PY - 2013 DA - 2013// TI - Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-279 DO - 10.1186/1471-2164-14-279 ID - Zhang2013 ER - TY - JOUR AU - Patel, R. K. AU - Jain, M. PY - 2012 DA - 2012// TI - NGS QC toolkit: a toolkit for quality control of next generation sequencing data JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0030619 DO - 10.1371/journal.pone.0030619 ID - Patel2012 ER - TY - JOUR AU - Li, R. AU - Yu, C. AU - Li, Y. AU - Lam, T. -. W. AU - Yiu, S. -. M. AU - Kristiansen, K. AU - Wang, J. PY - 2009 DA - 2009// TI - SOAP2: an improved ultrafast tool for short read alignment JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp336 DO - 10.1093/bioinformatics/btp336 ID - Li2009 ER - TY - CHAP AU - Iseli, C. AU - Jongeneel, C. V. AU - Bucher, P. PY - 1999 DA - 1999// TI - ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences BT - Proc/Int Conf Intell Syst Mol Biol; ISMB Int Conf Intell Syst Mol Biol ID - Iseli1999 ER - TY - JOUR AU - Ye, J. AU - Fang, L. AU - Zheng, H. AU - Zhang, Y. AU - Chen, J. AU - Zhang, Z. AU - Wang, J. AU - Li, S. AU - Li, R. AU - Bolund, L. AU - Wang, J. PY - 2006 DA - 2006// TI - WEGO: a web tool for plotting GO annotations JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl031 DO - 10.1093/nar/gkl031 ID - Ye2006 ER - TY - JOUR AU - Maere, S. AU - Heymans, K. AU - Kuiper, M. PY - 2005 DA - 2005// TI - BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti551 DO - 10.1093/bioinformatics/bti551 ID - Maere2005 ER - TY - JOUR AU - Eddy, S. R. PY - 2009 DA - 2009// TI - A new generation of homology search tools based on probabilistic inference JO - Genome Inform VL - 23 ID - Eddy2009 ER - TY - JOUR AU - Eddy, S. R. PY - 2011 DA - 2011// TI - Accelerated Profile HMM Searches JO - PLoS Comput Biol VL - 7 UR - https://doi.org/10.1371/journal.pcbi.1002195 DO - 10.1371/journal.pcbi.1002195 ID - Eddy2011 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Sato, Y. AU - Furumichi, M. AU - Tanabe, M. PY - 2012 DA - 2012// TI - KEGG for integration and interpretation of large-scale molecular data sets JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr988 DO - 10.1093/nar/gkr988 ID - Kanehisa2012 ER - TY - JOUR AU - Thimm, O. AU - Bläsing, O. AU - Gibon, Y. AU - Nagel, A. AU - Meyer, S. AU - Krüger, P. AU - Selbig, J. AU - Müller, L. A. AU - Rhee, S. Y. AU - Stitt, M. PY - 2004 DA - 2004// TI - MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes JO - Plant J VL - 37 UR - https://doi.org/10.1111/j.1365-313X.2004.02016.x DO - 10.1111/j.1365-313X.2004.02016.x ID - Thimm2004 ER - TY - JOUR AU - Usadel, B. AU - Nagel, A. AU - Thimm, O. AU - Redestig, H. AU - Blaesing, O. E. AU - Palacios-Rojas, N. AU - Selbig, J. AU - Hannemann, J. AU - Piques, M. C. AU - Steinhauser, D. AU - Scheible, W. R. AU - Gibon, Y. AU - Morcuende, R. AU - Weicht, D. AU - Meyer, S. AU - Stitt, M. PY - 2005 DA - 2005// TI - Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses JO - Plant Physiol VL - 138 UR - https://doi.org/10.1104/pp.105.060459 DO - 10.1104/pp.105.060459 ID - Usadel2005 ER - TY - JOUR AU - Lohse, M. AU - Nagel, A. AU - Herter, T. AU - May, P. AU - Schroda, M. AU - Zrenner, R. AU - Tohge, T. AU - Fernie, A. R. AU - Stitt, M. AU - Usadel, B. PY - 2014 DA - 2014// TI - Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data JO - Plant, cell & environment VL - 37 UR - https://doi.org/10.1111/pce.12231 DO - 10.1111/pce.12231 ID - Lohse2014 ER - TY - JOUR AU - Li, W. AU - Godzik, A. PY - 2006 DA - 2006// TI - Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl158 DO - 10.1093/bioinformatics/btl158 ID - Li2006 ER -