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Table 2 COG functional classification of S. caninervis transcripts

From: De novo assembly and characterization of the transcriptome in the desiccation-tolerant moss Syntrichia caninervis

Description

Code

Unigenes (n)

Information storage and processing

  

RNA processing and modification

A

125

Chromatin structure and dynamics

B

342

Translation, ribosomal structure and biogenesis

J

4,202

Transcription

K

2,927

Replication, recombination and repair

L

2,876

Cellular processing and signaling

  

Cell cycle control, cell division, chromosome partitioning

D

1,812

Cell wall/membrane/envelope biogenesis

M

1,774

Cell motility

N

348

Posttranslational modification, protein turnover, chaperones

O

2,825

Signal transduction mechanisms

T

2,069

Intracellular trafficking, secretion, and vesicular transport

U

1,249

Defense mechanisms

V

477

Extracellular structures

W

19

Nuclear structure

Y

9

Cytoskeleton

Z

496

Metabolism

  

Energy production and conversion

C

1,782

Amino acid transport and metabolism

E

1,584

Nucleotide transport and metabolism

F

447

Carbohydrate transport and metabolism

G

2,573

Coenzyme transport and metabolism

H

685

Lipid transport and metabolism

I

1,247

Inorganic ion transport and metabolism

P

1,126

Secondary metabolites biosynthesis, transport and catabolism

Q

932

Poorly characterized

  

General function prediction only

R

5,211

Function unknown

S

2,619

  1. n = number of unigenes.
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BMC Research Notes

ISSN: 1756-0500

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