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Table 2 Composition of Illumina in silico dataset generated with FASTQsim for the DTRA metagenomic algorithm challenge

From: FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets

Organism taxonomy Number of reads Number of genes
Bacteria, Proteobacteria, Gammaproteobacteria, Thiotrichales, Francisellaceae, Francisella, tularensis. 206 163
Bacteria, Proteobacteria, Alphaproteobacteria, Rhizobiales, Methylobacteriaceae, Methylobacterium 148 110
radiotolerans JCM 2831. [Genbank:CP001001.1]   
Bacteria, Proteobacteria, Gammaproteobacteria, Pseudomonales, Pseudomonadaceae, Pseudomonas 201 101
aeruginosa pao1. [Genbank:NC_002516.2]   
Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Corynebacterinae, Mycobacteriaceae, 200 111
Mycobacterium avium complex (mac). [Genbank:EU854994.1]   
Bacteria, Firmicutes, Bacilli, Lactobacillales, Streptococcaceae, Streptococcus pneumoniae ATCC 700669. 201 119
Bacteria, Proteobacteria, Gammaproteobacteria, Legionellales, Legionellaceae, Legionella pneumophila 50 37
Philadelphia 1. [Genbank:NC_002942.5]   
Human immunodeficiency virus I. [Genbank:NC_001802.1] 5 4