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Table 2 Composition of Illumina in silico dataset generated with FASTQsim for the DTRA metagenomic algorithm challenge

From: FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets

Organism taxonomy Number of reads Number of genes
Bacteria, Proteobacteria, Gammaproteobacteria, Thiotrichales, Francisellaceae, Francisella, tularensis. 206 163
[Genbank:NC_008245.1]   
Bacteria, Proteobacteria, Alphaproteobacteria, Rhizobiales, Methylobacteriaceae, Methylobacterium 148 110
radiotolerans JCM 2831. [Genbank:CP001001.1]   
Bacteria, Proteobacteria, Gammaproteobacteria, Pseudomonales, Pseudomonadaceae, Pseudomonas 201 101
aeruginosa pao1. [Genbank:NC_002516.2]   
Bacteria, Actinobacteria, Actinobacteridae, Actinomycetales, Corynebacterinae, Mycobacteriaceae, 200 111
Mycobacterium avium complex (mac). [Genbank:EU854994.1]   
Bacteria, Firmicutes, Bacilli, Lactobacillales, Streptococcaceae, Streptococcus pneumoniae ATCC 700669. 201 119
[Genbank:NC_011900.1]   
Bacteria, Proteobacteria, Gammaproteobacteria, Legionellales, Legionellaceae, Legionella pneumophila 50 37
Philadelphia 1. [Genbank:NC_002942.5]   
Human immunodeficiency virus I. [Genbank:NC_001802.1] 5 4