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Table 1 Publications containing applications of second generation sequencing in rubber tree transcriptome analysis

From: RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis

No.

Publication

Year

Sequencing method

Transcriptome type (length and number of reads)

1

Xia et al. [55]

2011

PE-RNA-Seq (Illumina)

Latex and leaf combined; clone RY7-33-97 (12 mil. reads or 1 Gb approx.)

2

Pootakham et al. [56]

2011

454 pyrosequencing (Roche)

Information not available

3

Triwitayakorn et al. [57]

2011

454 pyrosequencing (Roche)

Shoot apical meristem; clone RRIM 600 (2 mil. reads or 676.5 Mb approx.)

4

Chow et al. [29]

2012

RNA-Seq (Illumina)

Latex; clone RRIM 600 (10 mil. reads or 350 Mb approx.)

5

Li et al. [58]

2012

PE-RNA-Seq (Illumina)

Bark; clone RY7-33-97 (30 mil. reads or 3 Gb approx.)

6

Duan et al. [59]

2013

454 pyrosequencing (Roche)

Leaf, bark, latex, root, embryogenic tissues; clone PB 260(0.5 mil. reads or 200 Mb approx. per tissue)

7

Rahman et al. [60]

2013

PE-RNAseq (Illumina);

Leaf; clone RRIM 600 (4.89 Gb);

454 pyrosequencing (Roche)

Leaf; clone RRIM 600 (1,085 Mb)

  1. Sequencing depth, tissue types and the tree clones in each project are indicated.