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Table 4 List of the 30 most abundant InterPro domains in M. galloprovincialis digestive gland transcriptome

From: RNA sequencing and de novo assembly of the digestive gland transcriptome in Mytilus galloprovincialis fed with toxinogenic and non-toxic strains of Alexandrium minutum

Interpro domain

Description

Contigs in M. galloprovincialis

Mussel vs C. gigas rate*

IPR001073

Complement C1q protein

232

1.61

IPR001304

C-type lectin

154

1.15

IPR002048

Calcium-binding EF-hand

93

0.80

IPR018378

C-type lectin, conserved site

89

1.64

IPR013032

EGF-like, conserved site

88

0.53

IPR000742

Epidermal growth factor-like domain

83

0.31

IPR018247

EF-Hand 1, calcium-binding site

81

0.74

IPR001680

WD40 repeat

67

0.54

IPR000719

Protein kinase, catalytic domain

63

0.37

IPR017986

WD40-repeat-containing domain

61

0.49

IPR007110

Immunoglobulin-like domain

56

0.45

IPR002290

Serine/threonine-/dual specificity protein kinase, catalytic domain

56

0.90

IPR001507

Zona pellucida domain

54

9.24

IPR000504

RNA recognition motif domain

53

0.91

IPR002198

Short-chain dehydrogenase/reductase SDR

53

1.42

IPR011992

EF-hand-like domain

53

0.43

IPR006703

AIG1

52

3.99

IPR002181

Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain

51

0.58

IPR002347

Glucose/ribitol dehydrogenase

50

1.36

IPR001841

Zinc finger, RING-type

49

0.36

IPR020635

Tyrosine-protein kinase, catalytic domain

48

2.48

IPR000315

Zinc finger, B-box

47

0.17

IPR003582

Metridin-like ShK toxin

44

1.75

IPR002035

von Willebrand factor, type A

44

0.57

IPR017441

Protein kinase, ATP binding site

44

0.44

IPR001881

EGF-like calcium-binding

42

0.58

IPR020683

Ankyrin repeat-containing domain

42

0.27

IPR001128

Cytochrome P450

41

0.68

IPR003599

Immunoglobulin subtype

41

0.50

IPR019775

WD40 repeat, conserved site

41

0.58

IPR002110

Ankyrin repeat

41

0.27

  1. *the rate is the number of annotated contigs in M. galloprovincialis divided by the number of C. gigas predicted gene models sharing the same annotation.