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Figure 6 | BMC Research Notes

Figure 6

From: Evaluation of SNP calling using single and multiple-sample calling algorithms by validation against array base genotyping and Mendelian inheritance

Figure 6

GATK and CASAVA comparison in 19 trios. A and C show comparison for unfiltered sets (CASAVA ALL, GATK ALL). B and D show comparison for quality filtered sets (CASAVA PASS, GATK PASS). A and B shows boxplots of 19 transition-transversion ratios for pipeline’s variants sets (Total_TsTv) along with TsTv of varaints with Mendelian violations. C and D shows beanplots of 19 trios total and Mendelian violated variant sets.

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BMC Research Notes

ISSN: 1756-0500

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