Virulence traits | Genes | Primer sequence (5′à 3′) | Expected amplicon size (bp) | References |
---|---|---|---|---|
P fimbriae | papA | ATGGCAGTGGTGTCTTTTGGTG | 720 | [33] |
CGTCCCACCATACGTGCTCTTC | ||||
papEF | GCAACAGCAACGCTGGTTGCATCAT | 336 | [33] | |
AGAGAGAGCCACTCTTATACGGACA | ||||
P pili-associated G-adhesins | papC | GACGGCTGTACTGCAGGGTGTGGCG | 328 | [33] |
ATATCCTTTCTGCAGGGATGCAATA | ||||
Pyelonephritis-associated pili | papG allele II e III | CTGTAATTACGGAAGTGATTTCTG | 1070 | [33] |
ACTATCCGGCTCCGGATAAACCAT | ||||
papG allele II | GGGATGAGCGGGCCTTTGAT | 190 | [33] | |
CGGGCCCCCAAGTAACTCG | ||||
papG allele III | GGCCTGCAATGGATTTACCTGG | 258 | [33] | |
CCACCAAATGACCATGCCAGAC | ||||
S and F1C fimbriae | sfa//focDE | CTCCGGAGAACTGGGTGCATCTTAC | 410 | [33] |
CGGAGGAGTAATTACAAACCTGGCA | ||||
F1C fimbriae | focG | CAGCACAGGCAGTGGATACGA | 360 | [33] |
GAATGTCGCCTGCCCATTGCT | ||||
Dr-binding adhesin | afa/draBC | GGCAGAGGGCCGGCAACAGGC | 559 | [33] |
CCCGTAACGCGCCAGCATCTC | ||||
G fimbriae | gafD | TGTTGGACCGTCTCAGGGCTC | 952 | [33] |
CTCCCGGAACTCGCTGTTACT | ||||
Nonfimbrial adhesin type 1 | nfaE | GCTTACTGATTCTGGGATGGA | 559 | [33] |
CGGTGGCCGAGTCATATGCCA | ||||
Mannose-specific adhesion gene. Type1 fimbriae. | fimH | TGCAGAACGGATAAGCCGTGG | 508 | [33] |
GCAGTCACCTGCCCTCCGGTA | ||||
Haemolysin A | hlyA | AACAAGGATAAGCACTGTTCTGGCT | 1177 | [33] |
ACCATATAAGCGGTCATTCCCGTCA | ||||
Cytotoxic necrotizing factor 1 | cnf1 | GTGATAATATATCACATTATTC | 498 | [33] |
GAATTCGTCTCGTTGAGCTTCACTG | ||||
Yersiniabactin siderophore receptor | fyuA | TGATTAACCCCGCGACGGGAA | 880 | [33] |
CGCAGTAGGCACGATGTTGTA | ||||
Aerobactin siderophore receptor | iutA | GGCTGGACATCATGGGAACTGG | 300 | [33] |
CGTCGGGAACGGGTAGAATCG | ||||
Capsule synthesis primers | kpsMT II | GCGCATTTGCTGATACTGTTG | 272 | [33] |
CATCCAGACGATAAGCATGAGCA | ||||
kpsMT III | TCCTCTTGCTACTATTCCCCCT | 392 | [33] | |
AGGCGTATCCATCCCTCCTAAC | ||||
kpsMT1 (K1) | TAGCAAACGTTCTATTGGTGC | 153 | [33] | |
CATCCAGACGATAAGCATGAGCA | ||||
kpsMT 5 (K5) | CAGTATCAGCAATCGTTCTGTA | 159 | [33] | |
CATCCAGACGATAAGCATGAGCA | ||||
Invasion of brain endothelium gene (associate with neonatal meningitis) | IbeA | AGGCAGGTGTGCGCCGCGTAC | 170 | [33] |
TGGTGCTCCGGCAAACCATGC | ||||
Encodes colicin V | cvaC | CACACACAAACGGGAGCTGTT | 680 | [33] |
CTTCCCGCAGCATAGTTCCAT | ||||
Serum resistance gene | traT | GGTGTGGTGCGATGAGCACAG | 290 | [33] |
CACGGTTCAGCCATCCCTGAG | ||||
Pathogenicity islands described in a virulent uropathogen. | PAI | GGACATCCTGTTACAGCGCGCA | 930 | [33] |
TCGCCACCAATCACAGCCGAAC | ||||
Transcriptional Activator gene of aggregative adhesion fimbriae | aggR | GTATACACAAAAGAAGGAAGC | 254 | [34] |
ACAGAATCGTCAGCATCAGC | ||||
CVD432 gene probe sequence of the plasmid of aggregative adhesion | pAA (CVD432) | CTGGCCAAAGACTGTATCAT | 630 | [34] |
CAATGTATAGAAATCCGCTGTT |