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Table 1 Example of output from DivA for the Test alignment

From: DivA: detection of non-homologous and very divergent regions in protein sequence alignments

Alignment

Sequence

start

end

A

Z A

B

Z B

Test.fasta

Mesite

318

337

0.19

3.78

0.94

3.89

Test.fasta

Mesite

458

469

0.06

3.58

−0.80

3.86

Test.fasta

Mesite

872

882

0.22

3.68

0.20

3.92

Test.fasta

Duck

63

66

0.07

3.91

0.75

4.12

Test.fasta

Duck

564

621

0.17

4.01

0.49

4.02

Test.fasta

Duck

626

659

0.25

4.00

0.95

4.04

Test.fasta

Woodpecker

823

858

0.21

3.89

0.10

3.93

Test.fasta

Kea

768

781

0,24

3,97

0,27

4,01

Test.fasta

Ostrich

291

309

0,24

4,08

0,45

4,09

  1. The output of the method gives information on the name of the sequence on the alignment file, the start and end positions of the very divergent window, and the four parameter values.