Table 4 Dinucleotide step parameters values for RR steps in RNA helices
Step | Dataset (n) | Tilt | Roll | Twist | Shift | Slide | Rise | Prop.av | Cup | Zp |
|---|---|---|---|---|---|---|---|---|---|---|
AA/UU | free-RNA | 1.1 | 7.6 | 32.6 | 0.1 | -1.1 | 3.3 | -14.3 | 2.3 | 2.0 |
| Â | (40) | (1.3) | (3.1) | (2.1) | (0.3) | (0.3) | (0.1) | (3.8) | (6.4) | (0.3) |
| Â | non-cont | 0.9 | 6.8 | 30.5 | 0.1 | -1.3 | 3.3 | -10.6 | 2.0 | 2.2 |
(30) | (3.1) | (5.7) | (2.9) | (0.4) | (0.5) | (0.2) | (6.9) | (11.7) | (0.4) | |
| Â | cont | 0.8 | 6.7 | 30.7 | -0.0 | -1.5 | 3.3 | -10.0 | 4.1 | 2.2 |
(52) | (2.6) | (5.2) | (3.5) | (0.6) | (0.4) | (0.1) | (6.6) | (9.9) | (0.3) | |
AG/CU | free-RNA | 0.4 | 9.7 | 32.2 | 0.1 | -1.4 | 3.3 | -12.8 | -3.8 | 2.2 |
| Â | (82) | (2.0) | (3.0) | (2.4) | (0.4) | (0.4) | (0.1) | (3.7) | (6.2) | (0.2) |
| Â | non-cont | 0.6 | 8.4 | 31.4 | 0.2 | -1.6 | 3.3 | -10.6 | -2.8 | 2.3 |
(107) | (2.7) | (4.2) | (3.3) | (0.5) | (0.4) | (0.1) | (5.3) | (8.6) | (0.3) | |
| Â | cont | 1.3 | 8.0 | 30.6 | 0.2 | -1.7 | 3.3 | -9.0 | -2.2 | 2.3 |
(172) | (2.6) | (4.3) | (3.4) | (0.5) | (0.5) | (0.1) | (5.5) | (10.2) | (0.3) | |
GA/UC | free-RNA | 0.2 | 6.4 | 31.5 | -0.1 | -1.5 | 3.3 | -11.2 | 1.5 | 2.2 |
| Â | (68) | (2.0) | (4.1) | (2.3) | (0.4) | (0.4) | (0.1) | (5.5) | (7.1) | (0.3) |
| Â | non-cont | 0.7 | 6.1 | 31.1 | -0.0 | -1.7 | 3.3 | -8.9 | 1.4 | 2.4 |
(116) | (2.9) | (5.0) | (3.2) | (0.5) | (0.4) | (0.1) | (6.0) | (10.1) | (0.4) | |
| Â | cont | 0.3 | 5.9 | 30.8 | 0.0 | -1.7 | 3.3 | -8.9 | 1.2 | 2.4 |
(167) | (2.5) | (5.0) | (3.3) | (0.5) | (0.4) | (0.1) | (5.6) | (10.3) | (0.3) | |
GG/CC | free-RNA | 0.5 | 8.0 | 31.2 | 0.1 | -1.8 | 3.3 | -10.5 | -3.3 | 2.4 |
| Â | (157) | (2.6) | (3.7) | (2.7) | (0.5) | (0.4) | (0.1) | (4.9) | (8.3) | (0.3) |
| Â | non-cont | 0.7 | 7.7 | 31.0 | 0.2 | -1.9 | 3.3 | -8.7 | -4.5 | 2.5 |
(317) | (2.8) | (4.2) | (3.0) | (0.5) | (0.4) | (0.1) | (4.7) | (9.5) | (0.3) | |
| Â | cont | 1.1 | 7.3 | 31.0 | 0.2 | -1.9 | 3.3 | -8.5 | -5.0 | 2.5 |
(488) | (2.7) | (4.1) | (3.2) | (0.5) | (0.4) | (0.1) | (5.6) | (9.8) | (0.3) | |
RR | free-RNA | 0.5 | 8.0 | 31.6 | 0.1 | -1.5 | 3.3 | -11.6 | -1.8 | 2.2 |
| Â | (347) | (2.2) | (3.7) | (2.5) | (0.4) | (0.4) | (0.1) | (4.8) | (7.7) | (0.3) |
| Â | non-cont | 0.7 | 7.4 | 31.1 | 0.1 | -1.8 | 3.3 | -9.2 | -2.7 | 2.4 |
(570) | (2.8) | (4.5) | (3.1) | (0.5) | (0.4) | (0.1) | (5.3) | (9.9) | (0.3) | |
| Â | cont | 1.0 | 7.1 | 30.9 | 0.2 | -1.8 | 3.3 | -8.8 | -2.7 | 2.4 |
(879) | (2.6) | (4.4) | (3.3) | (0.5) | (0.4) | (0.1) | (5.6) | (10.4) | (0.3) | |
ModelRNA | Â | -0.4 | 13.1 | 30.0 | 0.0 | -1.2 | 3.3 | -10.4 | 0.0 | 2.2 |